Factsheet for Bra013385.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78930	Canola	cytosol	99.83	95.87
CDY05197	Canola	cytosol	99.83	95.87
Bra020966.1-P	Field mustard	cytosol	97.25	93.39
AT4G19210.1	Thale cress	cytosol	97.07	93.22
Bra012553.1-P	Field mustard	cytosol	96.9	93.06
PGSC0003DMT400051207	Potato	cytosol	94.15	90.41
GSMUA_Achr7P14490_001	Banana	cytosol	93.12	89.42
GSMUA_Achr7P14480_001	Banana	cytosol	93.12	89.42
GSMUA_Achr10P...	Banana	cytosol	92.6	88.93
KRH28995	Soybean	endoplasmic reticulum	92.25	88.45
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	87.44	87.89
EER95217	Sorghum	cytosol	91.22	87.75
Os11t0546000-01	Rice	plasma membrane	90.88	87.42
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	93.98	87.36
Solyc08g075360.1.1	Tomato	cytosol, plastid	90.02	86.3
TraesCS4A01G143000.4	Wheat	cytosol, golgi	89.5	86.09
TraesCS4B01G160000.1	Wheat	cytosol, golgi	89.33	85.93
HORVU4Hr1G038380.19	Barley	cytosol	89.16	85.62
TraesCS2B01G600300.1	Wheat	cytosol	87.44	84.11
TraesCS2D01G594500.1	Wheat	cytosol	87.44	84.11
TraesCSU01G036500.1	Wheat	cytosol	87.09	83.77
TraesCS4D01G159400.1	Wheat	cytosol	83.65	83.08
HORVU2Hr1G123150.4	Barley	cytosol	87.26	82.98
Zm00001d029044_P006	Maize	cytosol	91.39	81.82
Zm00001d047534_P007	Maize	cytosol	91.22	81.66
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	49.4	81.3
TraesCS1D01G220000.1	Wheat	cytosol	81.93	79.47
Bra021494.1-P	Field mustard	cytosol	82.1	79.1
TraesCS1B01G231900.1	Wheat	cytosol	81.24	78.8
TraesCS1A01G218400.1	Wheat	cytosol	81.24	78.41
Bra001515.1-P	Field mustard	cytosol	78.49	75.62
HORVU1Hr1G055810.1	Barley	mitochondrion	80.72	73.74
Os02t0282900-01	Rice	plastid	73.49	70.23
KXG30050	Sorghum	cytosol	69.71	66.83
TraesCS7B01G045400.1	Wheat	cytosol	50.09	65.69
Bra017243.1-P	Field mustard	cytosol	33.22	25.5

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra013385	EnsemblPlants:Bra013385.1	EnsemblPlants:Bra013385.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
InterPro:IPR017896	UniProt:M4DA75	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037	PFAM:PF04068
PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248
PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF54862	UniParc:UPI0002546630	:	:	:	:

Description

AT4G19210 (E=3e-223) ATRLI2, RLI2 | ATRLI2; transporter

Coordinates

chrA01:+:5318524..5321207

Molecular Weight (calculated)

65602.6 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.209

Length

581 amino acids

Sequence
(BLAST)

001: MADRLTCIAI VSADRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKVAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGPN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTNPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV RGNVGEVLDQ KDERNMKAEL
201: CADLELNQVI DRDVVNLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVSETPQES AEEIQSYARY KYPTMTKTQG NFRLKVSEGE FTDSQIIVML GENGTGKTTF IRMLPQKISP
401: KFENSVRHLL HQKIRDSYMH PQFVSDVMKP LQIEQLMDQQ VVNLSGGELQ RVALALCLGK PADIYLIDEP SAYLDSEQRI VASKVIKRFI LHAKKTAFVV
501: EHDFIMATYL ADRVIVYEGQ PSIDCTANCP QSLLTGMNLF LSHLNITFRR DPTNFRPRIN KLESTKDREQ KSAGSYYYLD D

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.