Factsheet for Bra021494.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60809	Canola	cytosol	99.67	99.67
Bra001515.1-P	Field mustard	cytosol	83.91	83.91
Bra013385.1-P	Field mustard	cytosol	79.1	82.1
Bra020966.1-P	Field mustard	cytosol	81.26	80.99
Bra012553.1-P	Field mustard	cytosol	80.76	80.5
Bra017243.1-P	Field mustard	cytosol	31.34	24.97

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra021494	EnsemblPlants:Bra021494.1	EnsemblPlants:Bra021494.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
InterPro:IPR017896	UniProt:M4DY98	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037	PFAM:PF04068
PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248
PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF54862	UniParc:UPI0002544737	:	:	:	:

Description

AT3G13640 (E=4e-313) ATRLI1 | ATRLI1; transporter

Coordinates

chrA01:+:24961724..24964173

Molecular Weight (calculated)

68213.8 Da

IEP (calculated)

8.153

GRAVY (calculated)

-0.261

Length

603 amino acids

Sequence
(BLAST)

001: MADRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGRLCIE VTPTSKTAFL SEELCIGCGI CVKKCPFEAI QIINLPKDLE KDTTHRYRSN AFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFDNPPDW QEILAHFRGS ELQSYFTRVV EENLKTAIKP QHVDQIKKIV QGDLGKMLEK LDERGMMEQI
201: VADLELNPVL DRRAKDVSGG ELQRFAIAAV FIKKAEIYMF DEPSSFLDVR QRLKAAQVIR SLLRPDSYVI VVEHDLSVLD YLSDFICCLY GKPTAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FKVSETPQES DGEVKSYARY KYPNMSKTLG SFKLEVMEGD FTDSQIVVML GENGTGKTTF IRMLAGALKP
401: DEGVEEDMPV FNVSYKPQTY DAQRECSVRQ LLHERIRDAY MHPQFVSDVM KPLQIEQLLD QAICTLSGGE SQRVGITLCL GKPADIYLID EPSAYLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPSIKCMAH SPQSLLSGMN LFLSHLNITF RRDPTNFRPR INKLESTKDR EQKSAGSYYY
601: LDD

Best Arabidopsis Sequence Match ( AT3G13640.1 )
(BLAST)

001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD

Arabidopsis Description

ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.