Factsheet for TraesCS4B01G160000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G038380.19	Barley	cytosol	99.83	99.67
TraesCS4A01G143000.4	Wheat	cytosol, golgi	99.67	99.67
TraesCS4D01G159400.1	Wheat	cytosol	93.87	96.92
Os11t0546000-01	Rice	plasma membrane	95.86	95.86
EER95217	Sorghum	cytosol	95.86	95.86
GSMUA_Achr7P14490_001	Banana	cytosol	92.88	92.73
GSMUA_Achr7P14480_001	Banana	cytosol	92.22	92.07
TraesCS2B01G600300.1	Wheat	cytosol	92.05	92.05
GSMUA_Achr10P...	Banana	cytosol	91.89	91.74
KRH28995	Soybean	endoplasmic reticulum	90.56	90.26
PGSC0003DMT400051207	Potato	cytosol	90.23	90.08
CDY01588	Canola	cytosol	89.74	89.59
CDX76485	Canola	cytosol	89.74	89.59
CDX98609	Canola	cytosol	89.57	89.42
Bra020966.1-P	Field mustard	cytosol	89.57	89.42
Zm00001d029044_P006	Maize	cytosol	96.03	89.37
Bra013385.1-P	Field mustard	cytosol	85.93	89.33
AT4G19210.1	Thale cress	cytosol	89.4	89.26
CDY05197	Canola	cytosol	89.24	89.09
CDX99388	Canola	cytosol	89.24	89.09
CDX78930	Canola	cytosol	89.24	89.09
Bra012553.1-P	Field mustard	cytosol	89.07	88.93
CDY09282	Canola	cytosol	87.58	88.91
Zm00001d047534_P007	Maize	cytosol	95.53	88.91
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	91.56	88.48
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	84.44	88.24
Solyc08g075360.1.1	Tomato	cytosol, plastid	87.42	87.13
TraesCS1B01G231900.1	Wheat	cytosol	83.28	83.97
TraesCS7B01G045400.1	Wheat	cytosol	50.5	68.85

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:IPR017896	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00037	PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS51379	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54862	EnsemblPlantsGene:TraesCS4B01G160000	EnsemblPlants:TraesCS4B01G160000.1	TIGR:cd03236
TIGR:cd03237	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:311352299..311375244

Molecular Weight (calculated)

68130.6 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.234

Length

604 amino acids

Sequence
(BLAST)

001: MADRLTRIAI VSEDKCKPKK CRQECKKSCP VVKTGKLCIE VSPAAKLAFI SEELCIGCGI CVKKCPFDAI EIINLPKDLE KDTTHRYGPN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KVLAGKLKPN LGRFKNPPDW QEILTYFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV QGNVGQVLEQ KDERDMKNEL
201: CVDLELNQVI DRNVGDLSGG ELQRFAIAVV AVQSAEIYMF DEPSSYLDVK QRLKAARVIR SLLRSNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKIAETQENA EEVATYQRYK YPTMSKTQGN FKLSVVEGEF TDSQIVVMLG ENGTGKTTFI RMLAGLLKPD
401: TMEGTEVEIP EFNVSYKPQK ISPKFQHPVR HLLHSKIRDS YTHPQFVSDV MKPLQIEQLM DQEVINLSGG ELQRVALCLC LGKPADIYLI DEPSAYLDSE
501: QRIVASKVIK RFILHAKKTA FIVEHDFIMA TYLADKVIVY EGLASIDCTA NAPQSLVSGM NKFLSHLDIT FRRDPTNYRP RINKLESTKD REQKNAGSYY
601: YLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.