Factsheet for Solyc08g075360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	87.95	92.21
CDY01588	Canola	cytosol	90.43	90.58
AT4G19210.1	Thale cress	cytosol	90.43	90.58
CDX76485	Canola	cytosol	90.26	90.41
CDX98609	Canola	cytosol	90.26	90.41
Bra020966.1-P	Field mustard	cytosol	90.1	90.25
GSMUA_Achr10P...	Banana	cytosol	90.1	90.25
GSMUA_Achr7P14480_001	Banana	cytosol	90.1	90.25
GSMUA_Achr7P14490_001	Banana	cytosol	90.1	90.25
CDX99388	Canola	cytosol	89.93	90.08
Bra013385.1-P	Field mustard	cytosol	86.3	90.02
CDX78930	Canola	cytosol	89.77	89.92
CDY05197	Canola	cytosol	89.77	89.92
Bra012553.1-P	Field mustard	cytosol	89.6	89.75
CDY09282	Canola	cytosol	87.95	89.58
KRH28995	Soybean	endoplasmic reticulum	89.11	89.11
EER95217	Sorghum	cytosol	88.78	89.07
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	91.75	88.96
Os11t0546000-01	Rice	plasma membrane	88.28	88.58
TraesCS4A01G143000.4	Wheat	cytosol, golgi	87.13	87.42
TraesCS4B01G160000.1	Wheat	cytosol, golgi	87.13	87.42
HORVU4Hr1G038380.19	Barley	cytosol	86.96	87.11
TraesCS2D01G594500.1	Wheat	cytosol	84.82	85.1
TraesCS4D01G159400.1	Wheat	cytosol	82.01	84.96
TraesCSU01G036500.1	Wheat	cytosol	84.32	84.6
TraesCS2B01G600300.1	Wheat	cytosol	84.16	84.44
HORVU2Hr1G123150.4	Barley	cytosol	84.32	83.63
Zm00001d029044_P006	Maize	cytosol	89.27	83.36
Zm00001d047534_P007	Maize	cytosol	88.78	82.9
TraesCS1D01G220000.1	Wheat	cytosol	80.2	81.14
TraesCS1B01G231900.1	Wheat	cytosol	79.87	80.8
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	46.86	80.45
TraesCS1A01G218400.1	Wheat	cytosol	79.7	80.23
HORVU1Hr1G055810.1	Barley	mitochondrion	80.03	76.26
Os02t0282900-01	Rice	plastid	71.78	71.55
KXG30050	Sorghum	cytosol	67.82	67.82
TraesCS7B01G045400.1	Wheat	cytosol	49.17	67.27

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006415	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0019538	GO:GO:0043024	InterPro:IPR003439	InterPro:IPR017896	UniProt:K4CMQ3	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00037	PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211
PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1
InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54862	EnsemblPlantsGene:Solyc08g075360.1	EnsemblPlants:Solyc08g075360.1.1
UniParc:UPI000276B6DF	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:59500411..59505614

Molecular Weight (calculated)

68283.1 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.167

Length

606 amino acids

Sequence
(BLAST)

001: MSNQRLSRIA ILNSDKCKPK KCGLQCKKCC PVVKTGKLCI EVTATSKIAF ISEELCIGCG ICVKKCPFEA IMIINLPKDL DKDTTHRYGA NTFKLHRLPV
101: PRPGQVLGLV GTNGIGKSTA LKVLAGKLKP NLGRFSNPPD WQEILTHFRG SELQNYFTRI LEDNLKAIIK PQYVDHIPRA VQGNVGQVLD QKDERDIKEK
201: LCVDLELNQV LDRNVGDLSG GELQRFAIAV VAIQNAEIYM FDEPSSYLDV RQRLKAAHVV RSLLRPDSYV IVVEHDLSVL DYLSDFICCL YGKPGAYGVV
301: TLPFSVREGI NIFLAGFVPT ENLRFRDESL TFKVAEIPQE VAEEIESYAR YRYPTMTKTQ GNFKLKVAEG EFTDSQIIVM LGENGTGKTT FIRMLAGLLK
401: PDVVEGSNLE IPEFNVSYKP QKISPKFQST VRHLLHQKIR DSYMHPQFCS DVMKPLQIEQ LMDQEVVNLS GGELQRVALT LCLGKPADIY LIDEPSAYLD
501: SEQRIVASKV IKRFILHTKK TAFVVEHDFI MAAYLADRVI VYEGTPSMDC VANAPQSLLT GMNLFLSHLN ITFRRDPTNF RPRINKLESA KDREQKLAGS
601: YYYLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.