CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0546000-01	Rice	plasma membrane	98.18	98.18
TraesCS4B01G160000.1	Wheat	cytosol, golgi	95.86	95.86
TraesCS4A01G143000.4	Wheat	cytosol, golgi	95.86	95.86
HORVU4Hr1G038380.19	Barley	cytosol	95.7	95.54
GSMUA_Achr7P14490_001	Banana	cytosol	95.03	94.88
GSMUA_Achr7P14480_001	Banana	cytosol	94.37	94.21
GSMUA_Achr10P...	Banana	cytosol	93.87	93.72
TraesCS4D01G159400.1	Wheat	cytosol	90.07	92.99
Zm00001d047534_P007	Maize	cytosol	99.67	92.76
Zm00001d029044_P006	Maize	cytosol	99.34	92.45
PGSC0003DMT400051207	Potato	cytosol	92.22	92.07
CDY01588	Canola	cytosol	91.89	91.74
CDX76485	Canola	cytosol	91.89	91.74
CDX98609	Canola	cytosol	91.72	91.57
Bra020966.1-P	Field mustard	cytosol	91.72	91.57
KRH28995	Soybean	endoplasmic reticulum	91.72	91.42
AT4G19210.1	Thale cress	cytosol	91.39	91.24
CDY05197	Canola	cytosol	91.39	91.24
CDX78930	Canola	cytosol	91.39	91.24
CDX99388	Canola	cytosol	91.39	91.24
Bra013385.1-P	Field mustard	cytosol	87.75	91.22
CDY09282	Canola	cytosol	89.74	91.09
Bra012553.1-P	Field mustard	cytosol	91.23	91.07
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	86.42	90.31
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	93.38	90.24
Solyc08g075360.1.1	Tomato	cytosol, plastid	89.07	88.78
KXG30050	Sorghum	cytosol	70.36	70.13

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EntrezGene:8056853	InterPro:AAA+_ATPase
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	UniProt:C5WRR1	EnsemblPlants:EER95217	ProteinID:EER95217	ProteinID:EER95217.1
GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006415	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538
GO:GO:0043024	InterPro:IPR003439	InterPro:IPR017896	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037
PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379
PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382
EnsemblPlantsGene:SORBI_3001G447300	SUPFAM:SSF52540	SUPFAM:SSF54862	unigene:Sbi.7001	UniParc:UPI0001A8330A	RefSeq:XP_002468219.1

Description

hypothetical protein

Coordinates

chr1:-:72434772..72440788

Molecular Weight (calculated)

68223.7 Da

IEP (calculated)

7.752

GRAVY (calculated)

-0.245

Length

604 amino acids

Sequence
(BLAST)

001: MAERLTRIAI VSEDKCKPKK CRQECKKSCP VVKTGKLCIE VTSASKLAFI SEELCIGCGI CVKKCPFDAI EIINLPKDLE KDTTHRYGPN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KVLAGKLKPN LGRFKNPPDW QEILTYFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV QGNVGQVLEQ KDERDMKAEL
201: CVDLELNQVI DRNVGDLSGG ELQRFAIAVV AVQNAEIYMF DEPSSYLDVK QRLKAAQVIR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKIAETQESA EEIETYQRYK YPTMSKTQGN FKLTVVEGEF TDSQIVVMLG ENGTGKTTFI RMLAGLLKPD
401: TVEGTDIEIP EFNVSYKPQK ISPKFQNTVR HLLHQKIRDS YMHPQFVSDV MKPLQIEQLM DQEVVNLSGG ELQRVAICLC LGKPADIYLI DEPSAYLDSE
501: QRIVASKVIK RFILHAKKTA FIVEHDFIMA TYLADKVIVY EGRPSIDCTA NAPQSLVSGM NKFLSHLDIT FRRDPTNYRP RINKLDSTKD REQKSAGSYY
601: YLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.