Factsheet for VIT_02s0087g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051207	Potato	cytosol	91.84	94.88
KRH28995	Soybean	endoplasmic reticulum	91.36	94.22
Bra013385.1-P	Field mustard	cytosol	87.36	93.98
CDX98609	Canola	cytosol	90.88	93.88
CDX99388	Canola	cytosol	90.88	93.88
CDX76485	Canola	cytosol	90.72	93.72
CDX78930	Canola	cytosol	90.72	93.72
CDY01588	Canola	cytosol	90.72	93.72
CDY05197	Canola	cytosol	90.72	93.72
Bra020966.1-P	Field mustard	cytosol	90.56	93.55
AT4G19210.1	Thale cress	cytosol	90.56	93.55
Bra012553.1-P	Field mustard	cytosol	90.4	93.39
EER95217	Sorghum	cytosol	90.24	93.38
CDY09282	Canola	cytosol	88.48	92.94
Os11t0546000-01	Rice	plasma membrane	89.6	92.72
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	85.6	92.56
Solyc08g075360.1.1	Tomato	cytosol, plastid	88.96	91.75
TraesCS4A01G143000.4	Wheat	cytosol, golgi	88.48	91.56
TraesCS4B01G160000.1	Wheat	cytosol, golgi	88.48	91.56
HORVU4Hr1G038380.19	Barley	cytosol	88.32	91.24
TraesCS2D01G594500.1	Wheat	cytosol	86.08	89.07
TraesCS4D01G159400.1	Wheat	cytosol	83.2	88.89
TraesCS2B01G600300.1	Wheat	cytosol	85.6	88.58
TraesCSU01G036500.1	Wheat	cytosol	85.44	88.41
HORVU2Hr1G123150.4	Barley	cytosol	85.76	87.72
Zm00001d029044_P006	Maize	cytosol	90.56	87.21
Zm00001d047534_P007	Maize	cytosol	90.08	86.75
TraesCS1D01G220000.1	Wheat	cytosol	80.64	84.14
TraesCS1B01G231900.1	Wheat	cytosol	80.32	83.81
TraesCS1A01G218400.1	Wheat	cytosol	80.32	83.39
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	46.88	83.0
HORVU1Hr1G055810.1	Barley	mitochondrion	80.32	78.93
GSMUA_Achr5P06930_001	Banana	extracellular	16.64	78.79
Os02t0282900-01	Rice	plastid	71.2	73.19
KXG30050	Sorghum	cytosol	68.8	70.96
TraesCS7B01G045400.1	Wheat	cytosol	48.8	68.85

Protein Annotations

EntrezGene:100249488	wikigene:100249488	MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM467716	ProteinID:CAN65893	ProteinID:CAN65893.1
ProteinID:CBI29193	ProteinID:CBI29193.3	UniProt:D7TFC0	EMBL:FN595769	GO:GO:0000054	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006415	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0043024	InterPro:IPR003439
InterPro:IPR017896	EntrezGene:LOC100249488	wikigene:LOC100249488	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037
PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379
PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF54862	UniParc:UPI0001BE32E7	ArrayExpress:VIT_02s0087g00770	EnsemblPlantsGene:VIT_02s0087g00770	EnsemblPlants:VIT_02s0087g00770.t01
unigene:Vvi.2635	RefSeq:XP_002271392	RefSeq:XP_002271392.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:18345685..18354668

Molecular Weight (calculated)

70889.0 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.251

Length

625 amino acids

Sequence
(BLAST)

001: MLELDLLLMR SRRRRREGRA MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTPASKIAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLD
101: KDTTHRYGPN TFKLHRLPVP RPGQVLGLVG TNGIGKSTAL KVLAGKLKPN LGRFNNPPDW QEILTYFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV
201: QGNVGQVLDQ KDERDMKEEL CFDLDLNQVI DRNVGDLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD
301: YLSDFICCLY GKPGAYGVVT LPFSVREGIN IFLAGFVPTE NLRFREESLT FKVAETPQES AEEIETYARY KYPTMTKTQG NFKLRVVEGE FTDSQIIVML
401: GENGTGKTTF IRMLAGLLKP DSVEDSDVEI PEFNVSYKPQ KISPKFQSTV RHLLHQKIRD SYMHPQFVSD VMKPLLIEQL MDQEVVNLSG GELQRVALCL
501: CLGKPADIYL IDEPSAYLDS EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSVDCT ANTPQSLLTG MNLFLSHLDI TFRRDPTNFR
601: PRINKLESTK DREQKSAGSY YYLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.