CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
cytosol 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051207	Potato	cytosol	92.41	92.56
CDX76485	Canola	cytosol	92.24	92.4
Bra013385.1-P	Field mustard	cytosol	88.45	92.25
Bra020966.1-P	Field mustard	cytosol	92.08	92.23
CDY01588	Canola	cytosol	92.08	92.23
CDX98609	Canola	cytosol	91.91	92.07
AT4G19210.1	Thale cress	cytosol	91.91	92.07
CDX78930	Canola	cytosol	91.75	91.9
CDX99388	Canola	cytosol	91.75	91.9
CDY05197	Canola	cytosol	91.75	91.9
CDY09282	Canola	cytosol	90.1	91.76
EER95217	Sorghum	cytosol	91.42	91.72
Bra012553.1-P	Field mustard	cytosol	91.42	91.57
Os11t0546000-01	Rice	plasma membrane	91.09	91.39
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	94.22	91.36
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	86.47	90.66
TraesCS4B01G160000.1	Wheat	cytosol, golgi	90.26	90.56
TraesCS4A01G143000.4	Wheat	cytosol, golgi	90.26	90.56
HORVU4Hr1G038380.19	Barley	cytosol	90.1	90.25
Solyc08g075360.1.1	Tomato	cytosol, plastid	89.11	89.11
TraesCS4D01G159400.1	Wheat	cytosol	84.98	88.03
TraesCS2D01G594500.1	Wheat	cytosol	87.46	87.75
TraesCS2B01G600300.1	Wheat	cytosol	87.29	87.58
TraesCSU01G036500.1	Wheat	cytosol	86.8	87.09
HORVU2Hr1G123150.4	Barley	cytosol	86.96	86.25
Zm00001d047534_P007	Maize	cytosol	91.42	85.36
Zm00001d029044_P006	Maize	cytosol	91.25	85.21
TraesCS1D01G220000.1	Wheat	cytosol	82.01	82.97
TraesCS1B01G231900.1	Wheat	cytosol	81.35	82.3
TraesCS1A01G218400.1	Wheat	cytosol	81.68	82.23
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	47.52	81.59
HORVU1Hr1G055810.1	Barley	mitochondrion	81.19	77.36
GSMUA_Achr5P06930_001	Banana	extracellular	16.5	75.76
Os02t0282900-01	Rice	plastid	73.43	73.19
KXG30050	Sorghum	cytosol	70.3	70.3
TraesCS7B01G045400.1	Wheat	cytosol	50.33	68.85

Protein Annotations

EntrezGene:100797423	MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02006776	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G090900	GO:GO:0000054
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006415	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0043024
UniProt:I1LIG5	InterPro:IPR003439	InterPro:IPR017896	EnsemblPlants:KRH28995	ProteinID:KRH28995	ProteinID:KRH28995.1
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037	PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1
InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54862	UniParc:UPI000233C52D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6874416..6879692

Molecular Weight (calculated)

68384.7 Da

IEP (calculated)

7.754

GRAVY (calculated)

-0.239

Length

606 amino acids

Sequence
(BLAST)

001: MADRLTRIAI VSNDRCKPKK CRQECKKSCP VVRTGRLCIE VTSSSKIAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLD RDTTHRYGPN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KVLAGKLKPN LGRFTNPPDW QEILTYFRGS ELQNYFTRIL EDDLKAIIKP QYVDHIPKAV QGNVGQVLDQ KDEREKKEEL
201: CADLELNQVI DRNVGDLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVIR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDDSLT FKVAETPQET AEEAQTYARY KYPTMSKTQG NFRLRVAEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DTIEGGSEVE MPEFNVSYKP QKISPKFQST VRHLLHQKIR DAYTHPQFVS DVMKPLLIEQ LMDQEVVNLS GGELQRVALC LCLGKPADIY LIDEPSAYLD
501: SEQRIIAAKV IKRFILHAKK TAFVVEHDFI MATYLADRVI VYEGQPSIDC IANTPQSLLS GMNLFLSHLD ITFRRDPTNF RPRINKLDST KDREQKSAGS
601: YYYLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.