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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra005931.1-P
Bra006195.1-P
Bra006242.1-P
Bra006369.1-P
Bra007982.1-P
Bra007983.1-P
Bra008835.1-P
Bra009273.1-P
Bra010457.1-P
Bra012553.1-P
Bra013385.1-P
Bra013899.1-P
Bra016143.1-P
Bra017408.1-P
Bra019155.1-P
Bra020966.1-P
Bra023404.1-P
Bra025746.1-P
Bra027946.1-P
Bra032191.1-P
Bra032422.1-P
Bra034916.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20590.1 Bra012553.1-P AT4G19210.1 20706207
AT1G20590.1 Bra013385.1-P AT4G19210.1 20706207
AT1G20590.1 Bra020966.1-P AT4G19210.1 20706207
AT1G20590.1 Bra010457.1-P AT4G25550.1 20706207
AT1G20590.1 Bra013899.1-P AT4G25550.1 20706207
AT1G20590.1 Bra019155.1-P AT4G25550.1 20706207
AT1G20610.1 Bra025746.1-P AT1G19520.1 20706207
AT1G20610.1 Bra032191.1-P AT1G43700.1 20706207
AT1G20610.1 Bra034916.1-P AT1G43700.1 20706207
AT1G20610.1 Bra027946.1-P AT1G56290.1 20706207
AT1G20610.1 Bra007982.1-P AT1G71380.1 20706207
AT1G20610.1 Bra007983.1-P AT1G71380.1 20706207
AT1G20610.1 Bra016143.1-P AT1G71380.1 20706207
AT1G20610.1 Bra006369.1-P AT3G11270.1 20706207
AT1G20610.1 Bra017408.1-P AT3G11270.1 20706207
AT1G20610.1 Bra032422.1-P AT3G11270.1 20706207
AT1G20610.1 Bra005931.1-P AT5G07300.1 20706207
AT1G20610.1 Bra009273.1-P AT5G07300.1 20706207
AT1G20610.1 Bra006195.1-P AT5G13330.1 20706207
AT1G20610.1 Bra008835.1-P AT5G13330.1 20706207
AT1G20610.1 Bra023404.1-P AT5G13330.1 20706207
AT1G20610.1 Bra006242.1-P AT5G14170.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY29520 Canola nucleus 97.56 97.56
Bra016460.1-P Field mustard nucleus 81.95 81.95
AT1G20610.1 Thale cress nucleus 79.27 75.76
Bra003727.1-P Field mustard nucleus 64.88 69.45
Bra015762.1-P Field mustard nucleus 71.46 67.98
PGSC0003DMT400075380 Potato nucleus 38.78 67.09
AT1G20590.1 Thale cress cytosol, golgi, nucleus, plastid 42.93 66.42
GSMUA_Achr5P19270_001 Banana cytosol 31.46 59.45
Solyc04g082430.2.1 Tomato nucleus 56.34 58.78
VIT_18s0001g14170.t01 Wine grape nucleus 62.93 58.5
PGSC0003DMT400025854 Potato nucleus 59.76 55.56
GSMUA_Achr11P... Banana nucleus 53.9 54.17
GSMUA_Achr5P19110_001 Banana nucleus 55.85 54.01
Os06t0726800-01 Rice nucleus 55.12 53.94
Solyc12g094600.1.1 Tomato nucleus 55.85 53.88
KXG20945 Sorghum nucleus 55.37 53.54
Zm00001d036360_P002 Maize nucleus 55.37 53.54
GSMUA_Achr8P13320_001 Banana nucleus 54.39 53.1
KRH60628 Soybean nucleus 52.44 53.09
KRH51329 Soybean nucleus, plastid 53.17 52.53
TraesCS7B01G472800.1 Wheat nucleus 53.66 52.51
TraesCS7D01G536000.1 Wheat nucleus 53.17 52.03
TraesCS7A01G549500.1 Wheat nucleus 52.93 51.79
Bra017726.1-P Field mustard nucleus 51.22 51.72
Bra037265.1-P Field mustard nucleus 51.22 51.34
HORVU7Hr1G121820.6 Barley nucleus 52.44 51.19
Bra024504.1-P Field mustard nucleus 52.2 51.07
HORVU0Hr1G022770.1 Barley nucleus, plastid 33.9 50.0
Os04t0563700-01 Rice mitochondrion 50.24 49.05
TraesCS2A01G404800.1 Wheat nucleus 47.8 48.4
EES12664 Sorghum nucleus 50.73 48.15
Zm00001d026129_P001 Maize nucleus 49.51 47.65
TraesCS2B01G422800.1 Wheat nucleus 47.32 47.43
TraesCS2D01G401700.1 Wheat nucleus, plastid 47.56 46.32
Zm00001d002662_P010 Maize nucleus 50.73 45.71
HORVU2Hr1G096070.2 Barley nucleus 47.32 41.19
Bra002046.1-P Field mustard nucleus 33.9 35.37
Bra028741.1-P Field mustard nucleus 34.63 34.22
Bra005880.1-P Field mustard nucleus, plastid 34.39 34.06
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 54.63 33.53
Bra011769.1-P Field mustard nucleus 31.95 30.61
Bra040793.1-P Field mustard nucleus 26.59 30.03
Bra040753.1-P Field mustard nucleus, plastid 26.59 30.03
Bra000822.1-P Field mustard nucleus 27.32 29.71
Bra032220.1-P Field mustard nucleus 25.85 29.69
Bra031463.1-P Field mustard nucleus 26.34 29.27
Bra033658.1-P Field mustard nucleus 25.37 29.21
Bra032202.1-P Field mustard plastid 30.0 29.15
Bra023606.1-P Field mustard plastid 29.51 28.88
Bra026756.1-P Field mustard plastid 28.78 28.85
Bra015671.1-P Field mustard plastid 27.07 28.76
Bra040792.1-P Field mustard nucleus, plastid 24.88 28.02
Bra026065.1-P Field mustard nucleus 34.39 27.87
Bra040710.1-P Field mustard nucleus 25.12 27.76
Bra016654.1-P Field mustard nucleus, plastid 29.27 26.97
Bra008973.1-P Field mustard nucleus, plastid 28.54 26.77
Bra022173.1-P Field mustard nucleus, plastid 24.39 26.53
Bra003563.1-P Field mustard plastid 27.56 26.16
Bra008477.1-P Field mustard plastid 28.05 25.16
Bra026120.1-P Field mustard nucleus 28.29 24.89
Bra035186.1-P Field mustard plastid 26.59 23.59
Bra016640.1-P Field mustard nucleus 35.12 21.98
Bra036544.1-P Field mustard nucleus 27.07 11.25
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EnsemblPlantsGene:Bra025831EnsemblPlants:Bra025831.1EnsemblPlants:Bra025831.1-PInterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634UniProt:M4EAM2PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF350SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI000253EFCA
Description
AT1G20610 (E=5e-177) CYCB2;3 | CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator
Coordinates
chrA06:-:8276815..8278869
Molecular Weight (calculated)
46913.1 Da
IEP (calculated)
4.841
GRAVY (calculated)
-0.360
Length
410 amino acids
Sequence
(BLAST)
001: MGTSDDAGGG GKIMPTRRAL SAINKNITEP PSSYPYALNN KRSLSERNVI RNKPPLRRPL TRKFADNKPQ IQEEETKKSN SLPSEEALAE RVDIDVSACG
101: KEGDCFNEPV FVQHTETMIE ETYQMEEGIE VEDADKEKER VINIDACVEK NSLAVVEYID DIFNFHNKSE ELSCVPSNYM DNQQDLNEMM RGILIDWLIE
201: VHDKFELMEE TLYLTVNIID RFLAVHQIVR KKLQLVGVTA LLLACKYEEV SVPVVDDLIL ISDKAYTRRE VLDMEKLIAN TLQFNFSLPT PYVFMRRFLK
301: AAESDKKLEV LSFFIIELCL VEYEMLEYTP SKLAASAIYT ARCTLDGFEE WSKTCEFHTG YKEEQLLACT RKMVDFHHNA GTGKLTGVHR KYNTSKFSYA
401: ARTEPAGFLL
Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.