Factsheet for Bra008973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006369.1-P
Bra007220.1-P
Bra007982.1-P
Bra007983.1-P
Bra015735.1-P
Bra016143.1-P
Bra017408.1-P
Bra022520.1-P
Bra032422.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	Bra007982.1-P	AT1G71380.1	20706207
AT5G11300.1	Bra007983.1-P	AT1G71380.1	20706207
AT5G11300.1	Bra016143.1-P	AT1G71380.1	20706207
AT5G11300.1	Bra015735.1-P	AT1G76540.1	12857813
AT5G11300.1	Bra006369.1-P	AT3G11270.1	20706207
AT5G11300.1	Bra017408.1-P	AT3G11270.1	20706207
AT5G11300.1	Bra032422.1-P	AT3G11270.1	20706207
AT5G11300.1	Bra007220.1-P	AT3G56150.1	20706207
AT5G11300.1	Bra022520.1-P	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69768	Canola	nucleus, plastid	99.54	99.54
AT5G11300.1	Thale cress	plastid	82.38	82.57
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	47.83	52.12
Bra031463.1-P	Field mustard	nucleus	43.25	51.22
Bra000822.1-P	Field mustard	nucleus	44.16	51.19
KRH16044	Soybean	nucleus	51.49	48.81
Bra026756.1-P	Field mustard	plastid	45.54	48.66
KRH52524	Soybean	nucleus	52.17	48.61
KRH05060	Soybean	nucleus	49.2	46.84
KRH61850	Soybean	nucleus	51.95	46.52
Bra016654.1-P	Field mustard	nucleus, plastid	46.45	45.62
Solyc06g065680.2.1	Tomato	nucleus, plastid	48.97	45.05
Bra008477.1-P	Field mustard	plastid	46.91	44.86
Bra003563.1-P	Field mustard	plastid	44.16	44.68
Bra026120.1-P	Field mustard	nucleus	46.91	43.99
Bra033658.1-P	Field mustard	nucleus	34.55	42.42
PGSC0003DMT400067117	Potato	plastid	47.83	42.05
Bra035186.1-P	Field mustard	plastid	44.16	41.77
Bra040792.1-P	Field mustard	nucleus, plastid	34.1	40.93
Bra040710.1-P	Field mustard	nucleus	34.55	40.7
Bra032220.1-P	Field mustard	nucleus	32.27	39.5
Bra015671.1-P	Field mustard	plastid	34.55	39.12
Bra023606.1-P	Field mustard	plastid	37.07	38.66
Bra040793.1-P	Field mustard	nucleus	31.35	37.74
Bra032202.1-P	Field mustard	plastid	36.38	37.68
Bra040753.1-P	Field mustard	nucleus, plastid	30.43	36.64
Bra022173.1-P	Field mustard	nucleus, plastid	30.66	35.54
Bra024504.1-P	Field mustard	nucleus	28.38	29.59
Bra037265.1-P	Field mustard	nucleus	27.23	29.1
Bra017726.1-P	Field mustard	nucleus	27.0	29.06
Bra016460.1-P	Field mustard	nucleus	27.23	29.02
Bra025831.1-P	Field mustard	nucleus	26.77	28.54
Bra003727.1-P	Field mustard	nucleus	24.71	28.2
Bra015762.1-P	Field mustard	nucleus	27.23	27.61
Bra002046.1-P	Field mustard	nucleus	24.49	27.23
Bra036544.1-P	Field mustard	nucleus	60.87	26.95
Bra011769.1-P	Field mustard	nucleus	25.63	26.17
Bra005880.1-P	Field mustard	nucleus, plastid	24.49	25.85
Bra028741.1-P	Field mustard	nucleus	24.03	25.3
Bra026065.1-P	Field mustard	nucleus	24.03	20.75
Bra016640.1-P	Field mustard	nucleus	25.63	17.1

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra008973	EnsemblPlants:Bra008973.1	EnsemblPlants:Bra008973.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008283	GO:GO:0009791	GO:GO:2000123
UniProt:M4CXM6	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF212	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00025442F6	:

Description

AT5G11300 (E=5e-203) CYC3B, CYC2BAT, CYCA2;2 | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS); cyclin-dependent protein kinase regulator

Coordinates

chrA10:+:14690738..14693264

Molecular Weight (calculated)

49157.9 Da

IEP (calculated)

5.779

GRAVY (calculated)

-0.314

Length

437 amino acids

Sequence
(BLAST)

001: MDCSSSMHPN ANKENVSTSH VEGGFGRITR SRAKKALGGG GVSIPPTKPS FKQQKKRSVL QDVSNTSAGH IYSDLLKGGN IKVTRKSLKQ CKKAAKGGAD
101: VAMEILDDMH TEKSKLAEDL SKIRMAESLN ASLSISKDEE ITEQQEDGSG AMDFCQVVDI DTNDKDPQCC SLYAADIYDN INVAELQPRP LANYMELVQR
201: DIDPSMRRIL IDWLVEVSED YNLVPDTLYL TVNLIDRFLS NSCIERHRLQ LLGATCMLIA SKYEELCAPP VEEFCDITAN TYTRPEVLSM EIQVLNFVQF
301: KLSVPTTKTF LRRFLRAAQA SYKSPLIEME FLANYLAELT LMEYNFLRFL PSLVAASAVF LARWTLDQTE DPWNPTLQHY TRYEVDELKT AVLAMEELQL
401: NTSGCTLTFT REKYNQPKFK SVAKMTSPKR VSPLFSG

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.