Factsheet for Bra031463.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005565.1-P	nucleus
Bra021808.1-P	nucleus
Bra022897.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G80370.1	Bra005565.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra021808.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra022897.1-P	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000822.1-P	Field mustard	nucleus	88.62	86.74
Bra003563.1-P	Field mustard	plastid	75.88	64.81
AT1G80370.1	Thale cress	plastid	78.86	63.12
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	41.46	61.94
Bra008477.1-P	Field mustard	plastid	76.15	61.49
Bra026756.1-P	Field mustard	plastid	67.75	61.12
Bra016654.1-P	Field mustard	nucleus, plastid	69.11	57.3
Bra035186.1-P	Field mustard	plastid	71.54	57.14
Bra026120.1-P	Field mustard	nucleus	69.38	54.94
VIT_09s0002g05240.t01	Wine grape	nucleus	63.14	47.55
KRH47513	Soybean	nucleus	58.27	45.17
Solyc03g120440.1.1	Tomato	nucleus, plastid	55.83	44.98
PGSC0003DMT400006576	Potato	nucleus	56.1	44.71
KRH44391	Soybean	nucleus	55.56	43.52
Bra008973.1-P	Field mustard	nucleus, plastid	51.22	43.25
OQU77084	Sorghum	nucleus	54.47	41.19
Os12t0502300-01	Rice	nucleus, plastid	54.47	41.02
Bra033658.1-P	Field mustard	nucleus	39.57	41.01
TraesCSU01G054300.1	Wheat	nucleus	55.01	40.52
Bra040710.1-P	Field mustard	nucleus	40.65	40.43
Bra040792.1-P	Field mustard	nucleus, plastid	39.84	40.38
TraesCS5D01G121100.2	Wheat	plastid	55.56	40.35
Bra032220.1-P	Field mustard	nucleus	38.75	40.06
TraesCS3A01G523600.1	Wheat	plastid	55.01	40.04
TraesCS5B01G114300.2	Wheat	plastid	55.01	40.04
TraesCS3D01G529100.1	Wheat	plastid	54.74	40.0
TraesCS5A01G108500.2	Wheat	plastid	55.01	39.96
Bra040753.1-P	Field mustard	nucleus, plastid	39.02	39.67
Bra040793.1-P	Field mustard	nucleus	39.02	39.67
HORVU3Hr1G114440.21	Barley	nucleus, plastid	54.2	39.45
KXG23504	Sorghum	mitochondrion, nucleus	51.22	39.13
Bra023606.1-P	Field mustard	plastid	43.36	38.19
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	50.14	38.14
Bra015671.1-P	Field mustard	plastid	39.84	38.08
GSMUA_Achr3P25340_001	Banana	nucleus	55.83	38.01
Zm00001d014756_P006	Maize	nucleus, plastid	53.39	37.81
Bra032202.1-P	Field mustard	plastid	41.46	36.26
Bra022173.1-P	Field mustard	nucleus, plastid	34.96	34.22
Bra017726.1-P	Field mustard	nucleus	30.62	27.83
Bra016460.1-P	Field mustard	nucleus	30.08	27.07
Bra024504.1-P	Field mustard	nucleus	30.35	26.73
Bra003727.1-P	Field mustard	nucleus	27.37	26.37
Bra025831.1-P	Field mustard	nucleus	29.27	26.34
Bra015762.1-P	Field mustard	nucleus	30.62	26.22
Bra037265.1-P	Field mustard	nucleus	29.0	26.16
Bra002046.1-P	Field mustard	nucleus	27.64	25.95
Bra005880.1-P	Field mustard	nucleus, plastid	27.64	24.64
Bra028741.1-P	Field mustard	nucleus	27.64	24.58
Bra011769.1-P	Field mustard	nucleus	28.18	24.3
Bra036544.1-P	Field mustard	nucleus	51.76	19.35
Bra026065.1-P	Field mustard	nucleus	25.47	18.58
Bra016640.1-P	Field mustard	nucleus	27.37	15.42

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra031463	EnsemblPlants:Bra031463.1	EnsemblPlants:Bra031463.1-P	ncoils:Coil
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	UniProt:M4ERN7	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002544E5B
SEG:seg	:	:	:	:	:

Description

AT1G80370 (E=2e-136) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator

Coordinates

chrA01:-:17229433..17231141

Molecular Weight (calculated)

42463.4 Da

IEP (calculated)

7.653

GRAVY (calculated)

-0.178

Length

369 amino acids

Sequence
(BLAST)

001: MNKENAVSGN VIPLHAHTAS EVDVATQSLG HVVRANTKRA SLDEKKANAP KKRAVLKDIT KEISAKLENI KQIEKVASSS VSTVASNLQV IDIDSDNKDP
101: LLCSLYAPEI YYNLRVAELQ RRPFPDYMER IQRDLTHTMR GILVDWLVEV SEEYKLVPDT LYLTVYLIDW FLHGNYIERQ RLQLLGVTCM FIASKYEEKF
201: VPRIEEFCFI TDNTFIKDQV LEMERQVLMH FSFQIYTPTS KTFLRRFLRA AHASDMQKPS VEIEFLANYL MELTLIDYEF LKFLPSVIAA SAVFLAKWTL
301: NQSSHPWNPT LEHYTTLKAS DLKASVHALQ DLQLNTKGCT LVSIRMKYKQ EKFKSVGVLS SPEIPDRLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.