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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G027080.4
HORVU1Hr1G040110.3 nucleus
HORVU1Hr1G054930.3
HORVU1Hr1G071330.3
HORVU2Hr1G110590.1
HORVU2Hr1G115450.1
HORVU3Hr1G064490.1 nucleus
HORVU3Hr1G064580.1 nucleus
HORVU3Hr1G077780.1
HORVU4Hr1G012380.1
HORVU4Hr1G023490.7
HORVU4Hr1G079310.1
HORVU4Hr1G080410.1 nucleus
HORVU4Hr1G085830.4
HORVU5Hr1G031690.1 nucleus
HORVU5Hr1G041750.1
HORVU5Hr1G046190.1
HORVU6Hr1G013680.2
HORVU6Hr1G039770.1
HORVU6Hr1G062870.1
HORVU6Hr1G066640.4
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2
HORVU7Hr1G080670.9
HORVU7Hr1G087050.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G15570.1 HORVU6Hr1G039770.1 AT1G57720.1 20706207
AT1G15570.1 HORVU7Hr1G087050.1 AT1G57720.1 20706207
AT1G15570.1 HORVU3Hr1G077780.1 AT1G61870.1 20706207
AT1G15570.1 HORVU5Hr1G041750.1 AT1G61870.1 20706207
AT1G15570.1 HORVU7Hr1G080670.9 AT1G64180.1 21798944
AT1G15570.1 HORVU4Hr1G079310.1 AT2G27960.1 20706207
AT1G15570.1 HORVU2Hr1G110590.1 AT3G11270.1 20706207
AT1G15570.1 HORVU4Hr1G012380.1 AT3G11270.1 20706207
AT1G15570.1 HORVU1Hr1G071330.3 AT3G24140.1 21798944
AT1G15570.1 HORVU0Hr1G027080.4 AT3G48150.1 21798944
AT1G15570.1 HORVU6Hr1G062870.1 AT3G48150.1 21798944
AT1G15570.1 HORVU4Hr1G085830.4 AT3G48750.1 16415207
AT1G15570.1 HORVU6Hr1G013680.2 AT3G48750.1 16415207
AT1G15570.1 HORVU4Hr1G023490.7 AT3G54180.1 20706207
AT1G15570.1 HORVU5Hr1G046190.1 AT3G54180.1 20706207
AT1G15570.1 HORVU1Hr1G054930.3 AT4G17680.1 21798944
AT1G15570.1 HORVU6Hr1G066640.4 AT4G17680.1 21798944
AT1G15570.1 HORVU6Hr1G077710.3 AT4G25200.1 21798944
AT1G15570.1 HORVU7Hr1G036470.3 AT4G25200.1 21798944
AT1G15570.1 HORVU7Hr1G036500.7 AT4G25200.1 21798944
AT1G15570.1 HORVU7Hr1G036540.3 AT4G25200.1 21798944
AT1G15570.1 HORVU7Hr1G036570.2 AT4G25200.1 21798944
AT1G15570.1 HORVU2Hr1G115450.1 AT5G16970.1 20706207
AT1G80370.1 HORVU1Hr1G040110.3 AT2G32710.1 20018602
AT1G80370.1 HORVU3Hr1G064490.1 AT2G32710.1 20018602
AT1G80370.1 HORVU3Hr1G064580.1 AT2G32710.1 20018602
AT1G80370.1 HORVU4Hr1G080410.1 AT2G32710.1 20018602
AT1G80370.1 HORVU5Hr1G031690.1 AT2G32710.1 20018602
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G529100.1 Wheat plastid 93.89 94.26
TraesCS3A01G523600.1 Wheat plastid 93.49 93.49
TraesCSU01G054300.1 Wheat nucleus 92.31 93.41
Os12t0502300-01 Rice nucleus, plastid 71.2 73.67
OQU77084 Sorghum nucleus 67.65 70.29
GSMUA_Achr1P14000_001 Banana nucleus, plasma membrane, plastid 32.74 67.21
Zm00001d014756_P006 Maize nucleus, plastid 65.88 64.11
Bra000822.1-P Field mustard nucleus 40.83 54.91
Bra031463.1-P Field mustard nucleus 39.45 54.2
CDY61993 Canola nucleus 40.24 54.11
CDY48212 Canola nucleus 39.84 53.58
CDY53304 Canola plastid 40.83 50.61
CDX81722 Canola nucleus, plastid 39.84 50.12
Bra026756.1-P Field mustard plastid 40.43 50.12
GSMUA_Achr3P25340_001 Banana nucleus 53.06 49.63
VIT_09s0002g05240.t01 Wine grape nucleus 47.93 49.59
CDX79389 Canola plastid 41.42 48.5
CDY66415 Canola nucleus 41.22 48.16
CDX67944 Canola plastid 41.03 48.15
Bra003563.1-P Field mustard plastid 41.03 48.15
CDY36574 Canola mitochondrion, nucleus 41.22 47.94
CDY38664 Canola nucleus, plastid 41.81 46.59
CDX96836 Canola nucleus, plastid 40.24 46.36
CDY37592 Canola mitochondrion, plastid 41.62 46.17
KRH47513 Soybean nucleus 43.2 46.01
AT1G15570.1 Thale cress nucleus, plastid 40.83 46.0
AT1G80370.1 Thale cress plastid 41.81 45.99
Bra008477.1-P Field mustard plastid 41.42 45.95
Bra016654.1-P Field mustard nucleus, plastid 40.24 45.84
CDY39984 Canola plastid 40.24 45.54
KRH44391 Soybean nucleus 42.21 45.44
Solyc03g120440.1.1 Tomato nucleus, plastid 41.03 45.41
Bra026120.1-P Field mustard nucleus 41.42 45.06
PGSC0003DMT400006576 Potato nucleus 41.03 44.92
CDX87305 Canola plastid 40.24 44.16
Bra035186.1-P Field mustard plastid 39.84 43.72
HORVU4Hr1G013320.1 Barley nucleus 30.37 41.29
HORVU0Hr1G001680.1 Barley nucleus 22.09 35.0
HORVU5Hr1G018820.2 Barley nucleus, plastid 30.18 33.7
HORVU1Hr1G068080.1 Barley plastid 22.68 33.63
HORVU4Hr1G069310.3 Barley nucleus 26.23 32.05
HORVU7Hr1G121820.6 Barley nucleus 25.64 30.95
HORVU0Hr1G022770.1 Barley nucleus, plastid 16.17 29.5
HORVU1Hr1G068010.7 Barley mitochondrion, nucleus 24.06 29.05
HORVU1Hr1G068160.2 Barley nucleus, plastid 24.85 28.44
HORVU0Hr1G026010.1 Barley nucleus, plastid 24.85 28.44
HORVU0Hr1G001690.16 Barley nucleus, peroxisome 24.06 27.85
HORVU3Hr1G078880.2 Barley nucleus 24.26 27.15
HORVU3Hr1G040990.2 Barley nucleus, plastid 24.46 25.2
HORVU2Hr1G096070.2 Barley nucleus 23.08 24.84
Protein Annotations
EnsemblPlants:HORVU3Hr1G114440.21EnsemblPlantsGene:HORVU3Hr1G114440Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF239PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771SMART:SM00385SMART:SM01332
SUPFAM:SSF47954MapMan:13.1.1.1.1::::
Description
No Description!
Coordinates
chrchr3H:-:691017340..691022165
Molecular Weight (calculated)
56732.8 Da
IEP (calculated)
9.357
GRAVY (calculated)
-0.458
Length
507 amino acids
Sequence
(BLAST)
001: MAARKENAVL IACQAPNGRV TRAQAATNRG RFGASLPAQV PVRTERKPAT KGKAKRGASD DNTCASALIS APPPKRRAAL KDVTNISCAN SSRNSTAVTK
101: HQARPTQKAG RNPSKNKQCM KKVPKPPLPA VSGTSFVVND SHNVEEAQKA ELLPPKEEPT ALLENKGSFS LWNIARNRES GVHEPFFQGR NTRDKSETAD
201: SNTGDYVGLN VIDIDKDNGN PQMCASYVAE IYRNLMAAEL IRRPKSNYME TLQRDITKGM RGILIDWLVE VSEEYKLVPD TLYLTVYLID QFLSRKYIER
301: QKLQLLGITS MLIASKYEEI CAPRVEEFCF ITDNTYTKNQ VLRMECEVLN DLGFHLSVPT IKTFLSRRFL RAAHASQKAP CATLGYLGNY LAELTLTDYS
401: FLKFHPSVVA ASAVFLAKWT LDQSDLPWNC TLEHYTSYKS SNIERCVRDL WELQQGNTSG SPPLNAIREK YRHEKFECVA NMLSPAMPVS LFRRQANDTT
501: PLLINDS
Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.