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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
iPSORT:plastid
MultiLoc:nucleus
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001450.1
HORVU0Hr1G004970.2
HORVU1Hr1G023030.2
HORVU1Hr1G050850.1
HORVU1Hr1G081030.2
HORVU1Hr1G081810.8
HORVU1Hr1G083960.6
HORVU2Hr1G022110.2
HORVU2Hr1G022120.1
HORVU2Hr1G022140.3
HORVU2Hr1G077130.1
HORVU2Hr1G083860.1
HORVU2Hr1G085340.2
HORVU2Hr1G085370.2
HORVU2Hr1G085430.1
HORVU2Hr1G085440.1
HORVU2Hr1G085520.2
HORVU2Hr1G110590.1
HORVU2Hr1G124110.1
HORVU3Hr1G089090.2
HORVU4Hr1G012380.1
HORVU4Hr1G023490.7
HORVU4Hr1G079310.1
HORVU4Hr1G085830.4
HORVU5Hr1G046190.1
HORVU5Hr1G066810.2
HORVU5Hr1G094750.2
HORVU6Hr1G013680.2
HORVU6Hr1G020090.2
HORVU6Hr1G037000.1
HORVU6Hr1G054100.2
HORVU6Hr1G054910.7
HORVU7Hr1G051180.3
HORVU7Hr1G068630.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11520.1 HORVU3Hr1G089090.2 AT1G05805.1 20706207
AT3G11520.1 HORVU6Hr1G054910.7 AT1G05805.1 20706207
AT3G11520.1 HORVU1Hr1G083960.6 AT1G56110.1 20706207
AT3G11520.1 HORVU2Hr1G022110.2 AT1G56110.1 20706207
AT3G11520.1 HORVU2Hr1G022120.1 AT1G56110.1 20706207
AT3G11520.1 HORVU2Hr1G022140.3 AT1G56110.1 20706207
AT3G11520.1 HORVU1Hr1G023030.2 AT3G61650.1 20706207
AT3G11520.1 HORVU0Hr1G001450.1 AT4G25550.1 20706207
AT3G11520.1 HORVU1Hr1G081030.2 AT4G25550.1 20706207
AT3G11520.1 HORVU2Hr1G124110.1 AT4G25550.1 20706207
AT3G11520.1 HORVU5Hr1G066810.2 AT5G06680.1 20706207
AT3G11520.1 HORVU6Hr1G020090.2 AT5G06680.1 20706207
AT3G11520.1 HORVU1Hr1G050850.1 AT5G46780.1 20706207
AT4G37490.1 HORVU7Hr1G051180.3 AT1G20930.1 20706207
AT4G37490.1 HORVU7Hr1G051180.3 AT1G76540.1 20706207
AT4G37490.1 HORVU4Hr1G085830.4 AT3G48750.1 12065421
AT4G37490.1 HORVU6Hr1G013680.2 AT3G48750.1 12065421
AT4G37490.1 HORVU4Hr1G023490.7 AT3G54180.1 12065421
AT4G37490.1 HORVU5Hr1G046190.1 AT3G54180.1 12065421
AT5G06150.1 HORVU1Hr1G081810.8 AT1G04810.1 20706207
AT5G06150.1 HORVU7Hr1G051180.3 AT1G20930.1 20706207
AT5G06150.1 HORVU7Hr1G068630.2 AT1G48920.1 20706207
AT5G06150.1 HORVU2Hr1G077130.1 AT1G71380.1 20706207
AT5G06150.1 HORVU4Hr1G079310.1 AT2G27960.1 20706207
AT5G06150.1 HORVU4Hr1G079310.1 AT2G27970.1 20706207
AT5G06150.1 HORVU2Hr1G110590.1 AT3G11270.1 20706207
AT5G06150.1 HORVU4Hr1G012380.1 AT3G11270.1 20706207
AT5G06150.1 HORVU4Hr1G023490.7 AT3G54180.1 20706207
AT5G06150.1 HORVU5Hr1G046190.1 AT3G54180.1 20706207
AT5G06150.1 HORVU0Hr1G004970.2 AT4G24820.1 20706207
AT5G06150.1 HORVU2Hr1G083860.1 AT4G24820.1 20706207
AT5G06150.1 HORVU6Hr1G054100.2 AT4G24820.1 20706207
AT5G06150.1 HORVU2Hr1G085340.2 AT5G25460.1 20706207
AT5G06150.1 HORVU2Hr1G085370.2 AT5G25460.1 20706207
AT5G06150.1 HORVU2Hr1G085430.1 AT5G25460.1 20706207
AT5G06150.1 HORVU2Hr1G085440.1 AT5G25460.1 20706207
AT5G06150.1 HORVU2Hr1G085520.2 AT5G25460.1 20706207
AT5G06150.1 HORVU5Hr1G094750.2 AT5G25460.1 20706207
AT5G06150.1 HORVU6Hr1G037000.1 AT5G25460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G326600.1 Wheat nucleus 94.26 93.85
TraesCS3A01G333000.2 Wheat nucleus 94.26 92.83
TraesCS3B01G363200.3 Wheat nucleus 93.82 92.19
TraesCSU01G217300.1 Wheat cytosol 33.77 70.83
EES03772 Sorghum nucleus, plastid 66.89 67.48
Zm00001d012560_P002 Maize nucleus, plastid 65.78 66.37
HORVU0Hr1G001680.1 Barley nucleus 44.81 63.44
KXG24389 Sorghum nucleus 35.1 63.1
Zm00001d043164_P002 Maize nucleus 66.0 61.78
HORVU1Hr1G068080.1 Barley plastid 45.7 60.53
HORVU1Hr1G068010.7 Barley mitochondrion, nucleus 56.07 60.48
HORVU0Hr1G001690.16 Barley nucleus, peroxisome 56.29 58.22
HORVU0Hr1G026010.1 Barley nucleus, plastid 56.51 57.79
HORVU1Hr1G068160.2 Barley nucleus, plastid 56.51 57.79
TraesCS7A01G229300.1 Wheat endoplasmic reticulum 40.18 55.32
PGSC0003DMT400058457 Potato nucleus 49.45 53.59
CDY69551 Canola nucleus 41.5 52.96
Solyc01g009040.2.1 Tomato nucleus 50.77 52.87
CDY62475 Canola nucleus 40.62 52.42
VIT_08s0040g00930.t01 Wine grape nucleus 51.66 51.66
Bra002046.1-P Field mustard nucleus 44.81 51.65
KRG95055 Soybean nucleus 51.21 50.99
KRH14611 Soybean nucleus 49.23 50.8
KRH66720 Soybean endoplasmic reticulum, vacuole 22.3 50.75
AT3G11520.1 Thale cress nucleus 46.36 50.72
GSMUA_AchrUn_... Banana nucleus 33.33 50.67
Bra028741.1-P Field mustard nucleus 46.14 50.36
Solyc10g080950.1.1 Tomato nucleus 50.99 50.0
KRH66713 Soybean nucleus 50.11 50.0
KRH73516 Soybean nucleus 48.12 49.55
PGSC0003DMT400015245 Potato nucleus 47.9 49.43
AT2G26760.1 Thale cress nucleus 42.16 49.35
PGSC0003DMT400072211 Potato nucleus 50.55 49.35
VIT_13s0067g01420.t01 Wine grape nucleus 50.33 49.35
PGSC0003DMT400018480 Potato nucleus 46.14 49.18
VIT_06s0009g02090.t01 Wine grape nucleus 45.03 48.8
Solyc10g078330.1.1 Tomato nucleus 45.47 48.7
KRH66715 Soybean nucleus 41.94 48.47
Solyc06g073610.2.1 Tomato nucleus 47.02 48.41
Bra005880.1-P Field mustard nucleus, plastid 44.15 48.31
CDY11354 Canola plastid 45.03 47.11
AT5G06150.1 Thale cress nucleus 46.14 46.97
CDX80988 Canola plastid 44.15 46.73
AT4G37490.1 Thale cress nucleus 43.93 46.5
CDX69311 Canola nucleus 42.6 46.06
Bra011769.1-P Field mustard nucleus 43.05 45.56
CDX75659 Canola nucleus 43.05 45.56
KRH66718 Soybean plastid 37.09 45.04
KRG95056 Soybean cytosol 37.09 43.41
HORVU3Hr1G040990.2 Barley nucleus, plastid 42.6 39.23
HORVU7Hr1G121820.6 Barley nucleus 34.88 37.62
HORVU0Hr1G022770.1 Barley nucleus, plastid 22.08 35.97
HORVU4Hr1G013320.1 Barley nucleus 27.15 32.98
HORVU2Hr1G096070.2 Barley nucleus 33.55 32.27
CDY14091 Canola plastid 46.36 32.01
CDY04980 Canola nucleus 46.36 29.25
AT1G34460.5 Thale cress cytosol 31.57 28.71
HORVU4Hr1G069310.3 Barley nucleus 23.4 25.54
HORVU5Hr1G018820.2 Barley nucleus, plastid 24.5 24.45
HORVU3Hr1G114440.21 Barley nucleus, plastid 27.15 24.26
Protein Annotations
EnsemblPlants:HORVU3Hr1G078880.2EnsemblPlantsGene:HORVU3Hr1G078880Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF343PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771SEG:segSMART:SM00385
SMART:SM01332SUPFAM:SSF47954UniParc:UPI000B480FEEUniProt:A0A287LTU2MapMan:13.1.1.1.2:
Description
No Description!
Coordinates
chrchr3H:-:580637850..580640792
Molecular Weight (calculated)
50022.3 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.238
Length
453 amino acids
Sequence
(BLAST)
001: MAARNPNVAA AQQQNRGGGG VPAMGKQKAA MAGKPDPKNT RRALGDIGNV EAINRRAPPL GDIANVVNVR AADGKSQLHE PVNRPVTRNF GAQLLKNAQE
101: KAKNPAARPA LRRAHVKPAP PPPEHVIEIS SDTDVTKSEA SSVSSVRKYS RKKVVTTLSH VLSARSKFAA GITEEPVIQD IDKLDGDNQL AVVDYIEDIY
201: KFYKVAENDC RAGDYMGSQV EINAKMRGIL VDWILEVHQK FELMPESLYL TVYIIDMYLS LQPVLRRELQ LVGVSALLIA CKYEEIWAPE VNDFILISDS
301: AYTREQILKM EKAILNRLEW NLTVPTLYVF LVRFAKAASS STDHKNDKEM ENTVFFFAEL ALLQYGLVQS KPSMVAAAAV YAARLTLNKT PLWTDTLRHH
401: TGFTEAQLMD AAKILVASHS TAPDSKLKVV YKKYSSEKLG GVALRPPATD LCK
Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.