Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G333000.2 | Wheat | nucleus | 98.9 | 97.83 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 97.58 | 96.31 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 93.85 | 94.26 |
| TraesCSU01G217300.1 | Wheat | cytosol | 34.29 | 72.22 |
| EES03772 | Sorghum | nucleus, plastid | 66.59 | 67.48 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 65.05 | 65.92 |
| KXG24389 | Sorghum | nucleus | 34.73 | 62.7 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 59.56 | 62.16 |
| Zm00001d043164_P002 | Maize | nucleus | 65.93 | 61.98 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 57.36 | 59.73 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 41.1 | 56.84 |
| PGSC0003DMT400058457 | Potato | nucleus | 49.67 | 54.07 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.55 | 52.87 |
| CDY69551 | Canola | nucleus | 41.1 | 52.68 |
| CDY62475 | Canola | nucleus | 40.22 | 52.14 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 51.65 | 51.88 |
| KRG95055 | Soybean | nucleus | 51.65 | 51.65 |
| Bra002046.1-P | Field mustard | nucleus | 44.4 | 51.4 |
| AT3G11520.1 | Thale cress | nucleus | 46.59 | 51.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.19 | 50.67 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.98 | 50.25 |
| Solyc10g080950.1.1 | Tomato | nucleus | 50.99 | 50.22 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.93 | 50.0 |
| Bra028741.1-P | Field mustard | nucleus | 45.49 | 49.88 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.91 | 49.66 |
| KRH14611 | Soybean | nucleus | 47.91 | 49.66 |
| PGSC0003DMT400018480 | Potato | nucleus | 46.37 | 49.65 |
| PGSC0003DMT400072211 | Potato | nucleus | 50.55 | 49.57 |
| AT2G26760.1 | Thale cress | nucleus | 41.98 | 49.35 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 50.11 | 49.35 |
| KRH66713 | Soybean | nucleus | 49.23 | 49.34 |
| KRH73516 | Soybean | nucleus | 47.69 | 49.32 |
| Solyc10g078330.1.1 | Tomato | nucleus | 45.71 | 49.17 |
| KRH66715 | Soybean | nucleus | 41.98 | 48.72 |
| TraesCS3D01G195200.1 | Wheat | plastid | 44.18 | 48.67 |
| Solyc06g073610.2.1 | Tomato | nucleus | 46.81 | 48.41 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.74 | 48.07 |
| CDY11354 | Canola | plastid | 44.62 | 46.88 |
| AT5G06150.1 | Thale cress | nucleus | 45.71 | 46.74 |
| AT4G37490.1 | Thale cress | nucleus | 43.96 | 46.73 |
| CDX80988 | Canola | plastid | 43.74 | 46.5 |
| CDX69311 | Canola | nucleus | 42.42 | 46.06 |
| CDX75659 | Canola | nucleus | 42.86 | 45.56 |
| Bra011769.1-P | Field mustard | nucleus | 42.86 | 45.56 |
| KRH66718 | Soybean | plastid | 36.92 | 45.04 |
| KRG95056 | Soybean | cytosol | 37.14 | 43.67 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 35.38 | 38.42 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 34.51 | 37.29 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 27.03 | 33.24 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 16.92 | 31.56 |
| CDY14091 | Canola | plastid | 45.49 | 31.55 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 24.62 | 29.63 |
| CDY04980 | Canola | nucleus | 45.93 | 29.11 |
| AT1G34460.5 | Thale cress | cytosol | 31.43 | 28.71 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 22.42 | 26.84 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 27.47 | 26.21 |
| TraesCS5D01G121100.2 | Wheat | plastid | 28.57 | 25.59 |
| TraesCS3D01G529100.1 | Wheat | plastid | 27.91 | 25.15 |
| TraesCS3D01G164600.1 | Wheat | plastid | 27.47 | 24.51 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G326600.1 | EnsemblPlantsGene:TraesCS3D01G326600 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF343 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3D:-:438607587..438610110
Molecular Weight (calculated)
50441.6 Da
IEP (calculated)
9.565
GRAVY (calculated)
-0.317
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARAHNVAA AQQQNRALGG VPAMGKQQKA AMAGRPDPKN TRRALGDIGN VEANNRRAPL GDIANVVNAR AAEGNRKPQP HEPVNRPVTR NFGAQLLKNA
101: QEKAKNPAAR PAVRRAHHVK PAPPPPEHVI EISSDSDVTK SEAGSVSSVR KYSRKKVVTT LSHVLSARSK FAAGITEEPA IQDIDKLDGD NQLAVVDYIE
201: DIYKFYKVAE NECRASDYMD SQEEINAKMR GILIDWILEV HQKFDLMPES LYLTVYIIDM YLSLQSVLRR ELQLVGVSAL LIACKYEEIW APEVNDFILI
301: SDSAYTREQI LKMEKAILNR LEWNLTVPTP YVFLVRFAKA ASSSDHKNDK EMENTVFFFA ELALLQYGLV QSKPSMVAAA AVYAARLTLK KTPLWTDTLK
401: HHTGFTEAQL MDAAKILVAS HSTAPDSKLK VVYKKYSSEK LGGVALRPPA TDLCK
101: QEKAKNPAAR PAVRRAHHVK PAPPPPEHVI EISSDSDVTK SEAGSVSSVR KYSRKKVVTT LSHVLSARSK FAAGITEEPA IQDIDKLDGD NQLAVVDYIE
201: DIYKFYKVAE NECRASDYMD SQEEINAKMR GILIDWILEV HQKFDLMPES LYLTVYIIDM YLSLQSVLRR ELQLVGVSAL LIACKYEEIW APEVNDFILI
301: SDSAYTREQI LKMEKAILNR LEWNLTVPTP YVFLVRFAKA ASSSDHKNDK EMENTVFFFA ELALLQYGLV QSKPSMVAAA AVYAARLTLK KTPLWTDTLK
401: HHTGFTEAQL MDAAKILVAS HSTAPDSKLK VVYKKYSSEK LGGVALRPPA TDLCK
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.