Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G326600.1 | Wheat | nucleus | 97.83 | 98.9 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 97.61 | 97.4 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 92.83 | 94.26 |
| TraesCSU01G217300.1 | Wheat | cytosol | 33.7 | 71.76 |
| EES03772 | Sorghum | nucleus, plastid | 65.87 | 67.48 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 64.35 | 65.92 |
| KXG24389 | Sorghum | nucleus | 34.35 | 62.7 |
| Zm00001d043164_P002 | Maize | nucleus | 65.0 | 61.78 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 58.04 | 61.24 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 40.87 | 57.14 |
| PGSC0003DMT400058457 | Potato | nucleus | 49.13 | 54.07 |
| CDY69551 | Canola | nucleus | 40.87 | 52.96 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.0 | 52.87 |
| CDY62475 | Canola | nucleus | 40.0 | 52.42 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 51.3 | 52.1 |
| KRG95055 | Soybean | nucleus | 51.3 | 51.87 |
| Bra002046.1-P | Field mustard | nucleus | 44.13 | 51.65 |
| AT3G11520.1 | Thale cress | nucleus | 46.3 | 51.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.61 | 50.34 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.74 | 50.25 |
| Solyc10g080950.1.1 | Tomato | nucleus | 50.43 | 50.22 |
| Bra028741.1-P | Field mustard | nucleus | 45.22 | 50.12 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.43 | 50.0 |
| KRH14611 | Soybean | nucleus | 47.61 | 49.89 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.39 | 49.66 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.87 | 49.65 |
| AT2G26760.1 | Thale cress | nucleus | 41.74 | 49.61 |
| PGSC0003DMT400072211 | Potato | nucleus | 50.0 | 49.57 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 49.78 | 49.57 |
| KRH66713 | Soybean | nucleus | 48.91 | 49.56 |
| KRH73516 | Soybean | nucleus | 47.39 | 49.55 |
| Solyc10g078330.1.1 | Tomato | nucleus | 45.22 | 49.17 |
| KRH66715 | Soybean | nucleus | 41.74 | 48.98 |
| Solyc06g073610.2.1 | Tomato | nucleus | 46.3 | 48.41 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.48 | 48.31 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 43.04 | 47.83 |
| CDY11354 | Canola | plastid | 44.35 | 47.11 |
| AT5G06150.1 | Thale cress | nucleus | 45.43 | 46.97 |
| CDX80988 | Canola | plastid | 43.48 | 46.73 |
| AT4G37490.1 | Thale cress | nucleus | 43.26 | 46.5 |
| CDX69311 | Canola | nucleus | 41.96 | 46.06 |
| Bra011769.1-P | Field mustard | nucleus | 42.39 | 45.56 |
| CDX75659 | Canola | nucleus | 42.39 | 45.56 |
| KRH66718 | Soybean | plastid | 36.52 | 45.04 |
| KRG95056 | Soybean | cytosol | 36.74 | 43.67 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 35.22 | 38.66 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 33.7 | 38.27 |
| TraesCS4A01G236700.2 | Wheat | plastid | 26.52 | 32.53 |
| CDY14091 | Canola | plastid | 45.22 | 31.71 |
| TraesCS5A01G072000.1 | Wheat | plastid | 23.91 | 29.26 |
| CDY04980 | Canola | nucleus | 45.43 | 29.11 |
| AT1G34460.5 | Thale cress | cytosol | 31.3 | 28.92 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 20.87 | 27.99 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 22.61 | 27.37 |
| TraesCS5A01G108500.2 | Wheat | plastid | 27.39 | 24.8 |
| TraesCS3A01G523600.1 | Wheat | plastid | 27.17 | 24.65 |
| TraesCS3A01G157000.1 | Wheat | plastid | 27.17 | 24.37 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 26.3 | 23.05 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G333000.2 | EnsemblPlantsGene:TraesCS3A01G333000 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF343 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3A:-:577562984..577565510
Molecular Weight (calculated)
50766.1 Da
IEP (calculated)
9.478
GRAVY (calculated)
-0.287
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARAQNNVA AAQQQNRALG GGGGGVPAMG KQQKAAMAGR PDPKNTRRAL GDIGNFEANN RRAPLGDIAN VVNARAAEGN RKPQPHEPVN RPVTRNFGAQ
101: LLKNAQEKAK NPAARPAVRR AHHVKPAPPP PEHVIEISSD SDVTKSEAGS VSSVRKYSRK KVVTTLSHVL SARSKFAAGI TEEPAIQDID KLDGDNQLAV
201: VDYIEDIYKF YKVAENECLA SDYMDSQVEI NAKMRGILID WILEVHQKFD LMPESLYLTV YIIDMYLSLQ SVLRRELQLV GVSALLIACK YEEIWAPEVN
301: DFILISDSAY TREQILKMEK AILNRLEWNL TVPTPYVFLV RFAKAACSSD HKNDKEMENT VFFFAELALL QYGLVQSKPS MVAAAAVYAA RLTLKKTPLW
401: TDTLKHHTGF TEAQLMDAAK ILVASHSTAP DSKLKVVYKK YSSEKLGGVA LRPPATDLCK
101: LLKNAQEKAK NPAARPAVRR AHHVKPAPPP PEHVIEISSD SDVTKSEAGS VSSVRKYSRK KVVTTLSHVL SARSKFAAGI TEEPAIQDID KLDGDNQLAV
201: VDYIEDIYKF YKVAENECLA SDYMDSQVEI NAKMRGILID WILEVHQKFD LMPESLYLTV YIIDMYLSLQ SVLRRELQLV GVSALLIACK YEEIWAPEVN
301: DFILISDSAY TREQILKMEK AILNRLEWNL TVPTPYVFLV RFAKAACSSD HKNDKEMENT VFFFAELALL QYGLVQSKPS MVAAAAVYAA RLTLKKTPLW
401: TDTLKHHTGF TEAQLMDAAK ILVASHSTAP DSKLKVVYKK YSSEKLGGVA LRPPATDLCK
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.