Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G084700.1 | Wheat | nucleus | 97.34 | 96.83 |
| TraesCS5B01G078200.1 | Wheat | plastid | 96.54 | 96.29 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 95.48 | 79.07 |
| Os12t0581800-01 | Rice | nucleus, plastid | 73.67 | 71.95 |
| TraesCS4A01G236700.2 | Wheat | plastid | 65.69 | 65.87 |
| Zm00001d030849_P001 | Maize | nucleus | 71.01 | 63.12 |
| EES16237 | Sorghum | nucleus, plastid | 71.28 | 62.62 |
| GSMUA_Achr10P... | Banana | nucleus | 51.6 | 61.2 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 70.21 | 60.41 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 61.44 | 59.08 |
| CDY06752 | Canola | nucleus | 44.68 | 58.95 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 55.85 | 57.53 |
| KRH52056 | Soybean | nucleus | 32.18 | 57.35 |
| KRH61375 | Soybean | nucleus | 46.54 | 53.52 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.0 | 53.11 |
| CDY17091 | Canola | nucleus | 50.53 | 53.07 |
| PGSC0003DMT400055428 | Potato | nucleus | 51.86 | 52.99 |
| Solyc04g078310.2.1 | Tomato | nucleus | 52.13 | 52.83 |
| KRH15427 | Soybean | nucleus, plastid | 51.06 | 52.75 |
| KRH05614 | Soybean | nucleus | 51.33 | 52.59 |
| CDY47595 | Canola | nucleus, plastid | 51.86 | 52.56 |
| Solyc12g088530.1.1 | Tomato | nucleus | 49.47 | 52.54 |
| PGSC0003DMT400030176 | Potato | nucleus | 49.47 | 52.25 |
| CDY17037 | Canola | nucleus, plastid | 50.53 | 52.2 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.53 | 52.2 |
| CDY22369 | Canola | nucleus | 48.67 | 52.14 |
| Solyc12g088500.1.1 | Tomato | nucleus | 48.67 | 51.69 |
| AT5G43080.1 | Thale cress | nucleus | 48.67 | 51.55 |
| Bra033658.1-P | Field mustard | nucleus | 48.67 | 51.4 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 50.53 | 51.35 |
| Solyc12g088520.1.1 | Tomato | nucleus | 48.14 | 50.99 |
| Bra040710.1-P | Field mustard | nucleus | 50.27 | 50.94 |
| CDY66770 | Canola | nucleus | 48.14 | 50.0 |
| Solyc12g088470.1.1 | Tomato | nucleus | 47.87 | 50.0 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 44.95 | 49.56 |
| Bra032220.1-P | Field mustard | nucleus | 46.81 | 49.3 |
| KRH61369 | Soybean | nucleus | 42.82 | 49.24 |
| CDY47596 | Canola | nucleus | 47.34 | 49.04 |
| Bra040793.1-P | Field mustard | nucleus | 47.34 | 49.04 |
| CDY23653 | Canola | nucleus | 46.54 | 49.02 |
| KRH52055 | Soybean | nucleus | 46.54 | 48.88 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 47.07 | 48.76 |
| CDY17039 | Canola | nucleus | 47.07 | 48.76 |
| CDY06757 | Canola | nucleus, plastid | 47.07 | 48.76 |
| KRH61371 | Soybean | nucleus | 44.95 | 48.42 |
| AT1G47210.2 | Thale cress | nucleus | 46.54 | 47.04 |
| AT1G47220.1 | Thale cress | nucleus | 40.16 | 46.18 |
| Solyc10g049360.1.1 | Tomato | nucleus | 45.48 | 45.24 |
| PGSC0003DMT400056625 | Potato | nucleus | 45.48 | 45.0 |
| KRH61373 | Soybean | nucleus, plastid | 44.68 | 44.8 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 45.21 | 44.74 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 36.7 | 40.23 |
| TraesCS3A01G157000.1 | Wheat | plastid | 46.01 | 33.72 |
| TraesCS3A01G523600.1 | Wheat | plastid | 41.76 | 30.97 |
| TraesCS5A01G108500.2 | Wheat | plastid | 40.96 | 30.32 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 38.56 | 27.62 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 30.32 | 27.54 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 30.59 | 26.38 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 27.13 | 25.19 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 27.93 | 25.06 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 29.26 | 23.91 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 20.48 | 23.4 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G072000.1 | EnsemblPlantsGene:TraesCS5A01G072000 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr5A:-:82314237..82315968
Molecular Weight (calculated)
41024.3 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.141
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENAAPA AAAGPRLTRA AAKRAATCSA GPSGGAKRKR VALSELPIVS NAGVVLRQPS KPAKPAAAAE GEEQHGGLSR CASTSPTPVG EEVSGGGGIT
101: QLSGSYASDI YTYLRTMEVE APRRPAADYI EAVQTDVTAN MRAILIDWLV EVAEEYKLVA DTLYLTVSYV DRFLSANPLG RNRLQLLGVA AMLIASKYEE
201: ISPPHVEDFC YITDNTYTRQ ELLTMESDIL KLLNFEIGSP TIKTFLRRFT RSGPEDKKRS SLLLEFMGSY LAELSLLDYS CLRFLPSVVA ASSLFLASLT
301: IGPDTNPWGK EMHKLTGYKA SELKDCIIAI HDLQLNRKGP SLPAIRDKYK QHRFKCVSML LPPVEIPASY FQDLTE
101: QLSGSYASDI YTYLRTMEVE APRRPAADYI EAVQTDVTAN MRAILIDWLV EVAEEYKLVA DTLYLTVSYV DRFLSANPLG RNRLQLLGVA AMLIASKYEE
201: ISPPHVEDFC YITDNTYTRQ ELLTMESDIL KLLNFEIGSP TIKTFLRRFT RSGPEDKKRS SLLLEFMGSY LAELSLLDYS CLRFLPSVVA ASSLFLASLT
301: IGPDTNPWGK EMHKLTGYKA SELKDCIIAI HDLQLNRKGP SLPAIRDKYK QHRFKCVSML LPPVEIPASY FQDLTE
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.