Factsheet for TraesCS5A01G468400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G481300.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G481000.1	Wheat	cytosol	99.66	99.66
HORVU5Hr1G111620.1	Barley	cytosol	98.32	98.32
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	90.74	90.74
EER90654	Sorghum	cytosol	90.24	90.39
Zm00001d012999_P001	Maize	cytosol	42.76	88.5
GSMUA_Achr11P...	Banana	cytosol	79.12	84.84
GSMUA_Achr7P21790_001	Banana	cytosol	84.34	84.2
Zm00001d034602_P003	Maize	cytosol	86.03	81.76
PGSC0003DMT400041701	Potato	cytosol	81.31	81.31
VIT_15s0024g00070.t01	Wine grape	cytosol	81.14	81.14
Solyc11g008870.1.1	Tomato	extracellular, plastid	80.98	80.98
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	80.47	80.2
KRH56478	Soybean	cytosol, nucleus	80.13	80.0
PGSC0003DMT400060046	Potato	cytosol	80.3	79.9
Solyc05g055730.2.1	Tomato	cytosol, unclear	79.97	79.7
AT2G44160.1	Thale cress	cytosol	78.11	78.11
CDY17879	Canola	cytosol	77.61	77.61
CDX79777	Canola	cytosol	77.61	77.48
Bra004810.1-P	Field mustard	cytosol	72.39	77.34
CDX98401	Canola	cytosol	76.26	76.52
CDX71855	Canola	cytosol	76.09	76.35
CDX67820	Canola	cytosol	76.09	76.35
Bra003397.1-P	Field mustard	cytosol	76.09	76.35
AT3G59970.3	Thale cress	cytosol	75.76	76.01
CDY41193	Canola	cytosol	75.76	76.01
Bra007497.1-P	Field mustard	cytosol	75.59	75.84
CDY30457	Canola	cytosol	75.93	75.8
CDY23420	Canola	cytosol	75.76	75.63
Bra037664.1-P	Field mustard	cytosol	75.76	75.63
VIT_05s0094g01600.t01	Wine grape	cytosol	9.09	65.85
Zm00001d042247_P001	Maize	extracellular, golgi	11.78	59.83
Zm00001d013002_P001	Maize	golgi, mitochondrion	11.45	58.12

Protein Annotations

EnsemblPlants:TraesCS5A01G468400.1	EnsemblPlantsGene:TraesCS5A01G468400	Gene3D:3.20.20.220	GO:GO:0003674	GO:GO:0003824	GO:GO:0004489
GO:GO:0006555	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0055114	InterPro:FAD-linked_oxidoreductase-like
InterPro:Fadh2_euk	InterPro:Mehydrof_redctse	KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	PANTHER:PTHR21091	PANTHER:PTHR21091:SF31
PFAM:PF02219	SUPFAM:SSF51730	TIGR:cd00537	TIGRFAMs:TIGR00677	MapMan:7.5.7.4	:

Description

No Description!

Coordinates

chr5A:-:645773251..645778289

Molecular Weight (calculated)

66311.3 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.250

Length

594 amino acids

Sequence
(BLAST)

001: MKVIEKIQEA AANGRTVFSF EYFPPKTEEG VENLFERMDR MVAHGPNFCD ITWGAGGSTA DVTLDIANRM QNMVCVETMM HLTCTNMPVE KIDNALDTIK
101: SNGIQNVLAL RGDPPHGQDK FVQVAGGFSC ALDLVEHIKA KYGDYFGITV AGYPEAHPEV ILGEEGATEE AYSKDLAYLK RKVDAGADVI VTQLFYDTDI
201: FLKFVNDCRQ IGITCPIVPG IMPINNYKGF VRMTGFCKTK IPAEITAALD PIKDNEEAVK AYGIHLGTEM CKKILASGIK TLHLYTLNME KTALAILMNL
301: GLIEESKLSR TLPWRPPTNV FRVKEDVRPI FWANRPKSYI SRTTGWDQYP HGRWGDSRNP SYGALNDHQF TRPRGRGKKL QEEWAVPLKS VQDINERFVN
401: FCEGKLKSSP WSELDGLQPE TTIIDDQLVK INSKGFLTIN SQPAVNAEKS ESPSVGWGGP GGYVYQKAYV EFFCAKEKLG QLIEKSKAFP SLTYIAVNKE
501: GESISNIPAN AVNAVTWGVF PGKEIIQPTV VDSASFMVWK DEAFEIWSRG WACLFPEGDS SRELLEQIQK SYYLVSLVDN DYISGDLFAA FKEI

Best Arabidopsis Sequence Match ( AT2G44160.1 )
(BLAST)

001: MKVIDKIQSL ADEGKTAFSF EFFPPKTEDG VDNLFERMDR MVAYGPTFCD ITWGAGGSTA DLTLDIASRM QNVVCVESMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFDC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IGENGLASNE AYQSDLEYLK KKIDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGISCPIVPG IMPINNYRGF LRMTGFCKTK IPVEVMAALE PIKDNEEAVK AYGIHLGTEM CKKMLAHGVK SLHLYTLNME KSALAILMNL
301: GMIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWEDFP QGRWGDSRSA SYGALSDHQF SRPRARDKKL QQEWVVPLKS VEDIQEKFKE
401: LCLGNLKSSP WSELDGLQPE TRIINEQLIK VNSKGFLTIN SQPSVNAERS DSPTVGWGGP VGYVYQKAYL EFFCSKEKLD AVVEKCKALP SITYMAVNKG
501: EQWVSNTAQA DVNAVTWGVF PAKEIIQPTI VDPASFNVWK DEAFETWSRS WANLYPEADP SRNLLEEVKN SYYLVSLVEN DYINGDIFAV FADL

Arabidopsis Description

MTHFR2Methylenetetrahydrofolate reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:O80585]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.