CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67820	Canola	cytosol	99.16	99.16
CDY41193	Canola	cytosol	96.62	96.62
CDX71855	Canola	cytosol	96.11	96.11
AT3G59970.3	Thale cress	cytosol	96.11	96.11
CDY17879	Canola	cytosol	85.47	85.19
CDX79777	Canola	cytosol	84.97	84.54
CDY23420	Canola	cytosol	83.78	83.36
CDY30457	Canola	cytosol	83.78	83.36
Zm00001d012999_P001	Maize	cytosol	39.7	81.88
KRH56478	Soybean	cytosol, nucleus	79.9	79.5
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	79.73	79.19
PGSC0003DMT400041701	Potato	cytosol	78.72	78.45
Solyc11g008870.1.1	Tomato	extracellular, plastid	78.72	78.45
EER90654	Sorghum	cytosol	78.55	78.41
PGSC0003DMT400060046	Potato	cytosol	78.21	77.55
Solyc05g055730.2.1	Tomato	cytosol, unclear	78.04	77.52
GSMUA_Achr7P21790_001	Banana	cytosol	77.87	77.48
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	77.7	77.44
GSMUA_Achr11P...	Banana	cytosol	72.47	77.44
TraesCS5B01G481000.1	Wheat	cytosol	76.86	76.6
HORVU5Hr1G111620.1	Barley	cytosol	76.52	76.26
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	76.52	76.26
TraesCS5D01G481300.1	Wheat	cytosol	76.52	76.26
Zm00001d034602_P003	Maize	cytosol	75.68	71.68
VIT_05s0094g01600.t01	Wine grape	cytosol	7.94	57.32
Zm00001d042247_P001	Maize	extracellular, golgi	10.47	52.99
Zm00001d013002_P001	Maize	golgi, mitochondrion	10.14	51.28

Protein Annotations

KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	Gene3D:3.20.20.220	MapMan:7.5.7.4	GO:A0A078EB29	EnsemblPlants:CDX98401
ProteinID:CDX98401	ProteinID:CDX98401.1	InterPro:FAD-linked_oxidoreductase-like	InterPro:Fadh2_euk	GO:GO:0003674	GO:GO:0003824
GO:GO:0004489	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006555	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987
GO:GO:0035999	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00105985001	InterPro:MTHF_reductase_bac	InterPro:Mehydrof_redctse	PFAM:PF02219
PANTHER:PTHR21091	PANTHER:PTHR21091:SF31	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF51730	TIGRFAMs:TIGR00676
TIGRFAMs:TIGR00677	UniPathway:UPA00193	UniParc:UPI0004EC6F9A	:	:	:

Description

BnaC06g17620D

Coordinates

chrLK031904:+:1109295..1112477

Molecular Weight (calculated)

66326.0 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.276

Length

592 amino acids

Sequence
(BLAST)

001: MKVVDKIKSV TEQGQTAFSF EFFPPKTEDG VENLFERMDR LVSYGPSFCD ITWGAGGSTA DLTLEIASRM QNAICVETMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFAC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IEANGLATPE SYQSDLAYLK RKVDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGINCPIVPG IMPISNYKGF LRMAGFCKTK IPAELTAALE PIKDNEEAVK AYGIHFATEM CKKILAHGIT TLHIYTLNVD KSAIGILMNL
301: GLIDESKITR SLPWRPPANV FRTKEDVRPI FWANRPKSYI SRTKGWNDFP QGRWGDSRSA SYSTLSDYQF MRPRARDKKL QQEWVVPLKG IEDVQEKFKE
401: LCLGNLKSSP WSELDGLQPE TKIINEQLGK INSNGFLTIN SQPSVNAAKS DSPAIGWGGP GGYVYQKAYL EFFCSKDKLD TLVEKSKAFP SITFMAVNKA
501: ENWVSNIGES DVNAVTWGVF PAKEVNQPTI VDPASFKVWK DEAFEIWSRS WANLYPEDDP SRKLLEEVKN SYYLVSLVDN DYINGDIFSV FA

Best Arabidopsis Sequence Match ( AT3G59970.3 )
(BLAST)

001: MKVVDKIKSV TEQGQTAFSF EFFPPKTEDG VENLFERMDR LVSYGPTFCD ITWGAGGSTA DLTLEIASRM QNVICVETMM HLTCTNMPIE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFAC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IEADGLATPE SYQSDLAYLK KKVDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGINCPIVPG IMPISNYKGF LRMAGFCKTK IPAELTAALE PIKDNDEAVK AYGIHFATEM CKKILAHGIT SLHLYTLNVD KSAIGILMNL
301: GLIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWNDFP HGRWGDSHSA AYSTLSDYQF ARPKGRDKKL QQEWVVPLKS IEDVQEKFKE
401: LCIGNLKSSP WSELDGLQPE TKIINEQLGK INSNGFLTIN SQPSVNAAKS DSPAIGWGGP GGYVYQKAYL EFFCSKDKLD TLVEKSKAFP SITYMAVNKS
501: ENWVSNTGES DVNAVTWGVF PAKEVIQPTI VDPASFKVWK DEAFEIWSRS WANLYPEDDP SRKLLEEVKN SYYLVSLVDN NYINGDIFSV FA

Arabidopsis Description

MTHFR1Methylenetetrahydrofolate reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.