Factsheet for Zm00001d034602_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012999_P001	Maize	cytosol	44.0	95.82
EER90654	Sorghum	cytosol	89.76	94.6
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	83.52	87.88
TraesCS5B01G481000.1	Wheat	cytosol	82.08	86.36
TraesCS5D01G481300.1	Wheat	cytosol	81.76	86.03
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	81.76	86.03
HORVU5Hr1G111620.1	Barley	cytosol	81.28	85.52
GSMUA_Achr11P...	Banana	cytosol	73.44	82.85
GSMUA_Achr7P21790_001	Banana	cytosol	78.56	82.52
VIT_15s0024g00070.t01	Wine grape	cytosol	75.2	79.12
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	75.04	78.69
KRH56478	Soybean	cytosol, nucleus	74.72	78.49
PGSC0003DMT400041701	Potato	cytosol	74.24	78.11
Solyc11g008870.1.1	Tomato	extracellular, plastid	74.24	78.11
PGSC0003DMT400060046	Potato	cytosol	74.56	78.06
Solyc05g055730.2.1	Tomato	cytosol, unclear	74.08	77.68
CDX98401	Canola	cytosol	71.68	75.68
CDX67820	Canola	cytosol	71.68	75.68
AT2G44160.1	Thale cress	cytosol	71.84	75.59
Bra003397.1-P	Field mustard	cytosol	71.52	75.51
CDX79777	Canola	cytosol	71.84	75.46
CDY17879	Canola	cytosol	71.52	75.25
AT3G59970.3	Thale cress	cytosol	71.2	75.17
CDY41193	Canola	cytosol	71.2	75.17
CDX71855	Canola	cytosol	71.2	75.17
Bra007497.1-P	Field mustard	cytosol	71.04	75.0
Bra004810.1-P	Field mustard	cytosol	66.56	74.82
CDY30457	Canola	cytosol	70.56	74.12
CDY23420	Canola	cytosol	70.4	73.95
Bra037664.1-P	Field mustard	cytosol	70.4	73.95
Zm00001d042247_P001	Maize	extracellular, golgi	12.16	64.96
VIT_05s0094g01600.t01	Wine grape	cytosol	8.48	64.63
Zm00001d013002_P001	Maize	golgi, mitochondrion	11.84	63.25

Protein Annotations

KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	Gene3D:3.20.20.220	EntrezGene:541794	MapMan:7.5.7.4	UniProt:A0A1D6L978
InterPro:FAD-linked_oxidoreductase-like	InterPro:Fadh2_euk	GO:GO:0003674	GO:GO:0003824	GO:GO:0004489	GO:GO:0006555
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0035999	GO:GO:0055114
InterPro:Mehydrof_redctse	ProteinID:ONM10744.1	PFAM:PF02219	PANTHER:PTHR21091	PANTHER:PTHR21091:SF31	SUPFAM:SSF51730
TIGRFAMs:TIGR00677	UniParc:UPI0008442FC4	EnsemblPlantsGene:Zm00001d034602	EnsemblPlants:Zm00001d034602_P003	EnsemblPlants:Zm00001d034602_T003	SEG:seg

Description

brown midrib2 brown midrib2

Coordinates

chr1:-:297605181..297611285

Molecular Weight (calculated)

70158.3 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.244

Length

625 amino acids

Sequence
(BLAST)

001: MKVIEKILEA AGDGRTAFSF EYFPPKTEEG VENLFERMDR MVAHGPSFCD ITWGAGGSTA DLTLEIANRM QNMVCVETMM HLTCTNMPVE KIDHALETIK
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFAC ALDLVQHIRA KYGDYFGITV AGYPEAHPDA IQGEGGATLE AYSNDLAYLK RKVDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGITCPIVPG IMPINNYKGF LRMTGFCKTK IPSEITAALD PIKDNEEAVR QYGIHLGTEM CKKILATGIK TLHLYTLNMD KSAIGILMNL
301: GLIEESKVSR PLPWRPATNV FRVKEDVRPI FWANRPKSYL KRTLGWDQYP HGRWGDSRNP SYGALTDHQF TRPRGRGKKL QEEWAVPLKS VEDISERFTN
401: FCQGKLTSSP WSELDGLQPE TKIIDDQLVN INQKGFLTIN SQPAVNGEKS DSPTVGWGGP GGYVYQKAYL EFFCAKEKLD QLIEKIKAFP SLTYIAVNKD
501: GETFSNISPN AVNAVTWGVF PGKEIIQPTV VDHASFMVWK DEAFEIWTRG WGCMFPEGDS SRELLEKIPW LLTFRFRRPT TWSASLTTTT SRGTCLLPSR
601: SDYALMVCIV VWLDPTIFLH PRLQV

Best Arabidopsis Sequence Match ( AT2G44160.1 )
(BLAST)

001: MKVIDKIQSL ADEGKTAFSF EFFPPKTEDG VDNLFERMDR MVAYGPTFCD ITWGAGGSTA DLTLDIASRM QNVVCVESMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFDC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IGENGLASNE AYQSDLEYLK KKIDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGISCPIVPG IMPINNYRGF LRMTGFCKTK IPVEVMAALE PIKDNEEAVK AYGIHLGTEM CKKMLAHGVK SLHLYTLNME KSALAILMNL
301: GMIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWEDFP QGRWGDSRSA SYGALSDHQF SRPRARDKKL QQEWVVPLKS VEDIQEKFKE
401: LCLGNLKSSP WSELDGLQPE TRIINEQLIK VNSKGFLTIN SQPSVNAERS DSPTVGWGGP VGYVYQKAYL EFFCSKEKLD AVVEKCKALP SITYMAVNKG
501: EQWVSNTAQA DVNAVTWGVF PAKEIIQPTI VDPASFNVWK DEAFETWSRS WANLYPEADP SRNLLEEVKN SYYLVSLVEN DYINGDIFAV FADL

Arabidopsis Description

MTHFR2Methylenetetrahydrofolate reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:O80585]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.