CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56478	Soybean	cytosol, nucleus	97.65	97.82
Zm00001d012999_P001	Maize	cytosol	40.77	84.67
PGSC0003DMT400041701	Potato	cytosol	83.89	84.18
Solyc11g008870.1.1	Tomato	extracellular, plastid	83.72	84.01
GSMUA_Achr11P...	Banana	cytosol	77.52	83.39
PGSC0003DMT400060046	Potato	cytosol	83.05	82.91
Solyc05g055730.2.1	Tomato	cytosol, unclear	82.72	82.72
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	82.38	82.66
EER90654	Sorghum	cytosol	81.88	82.29
GSMUA_Achr7P21790_001	Banana	cytosol	82.05	82.18
AT2G44160.1	Thale cress	cytosol	80.37	80.64
CDY41193	Canola	cytosol	80.03	80.57
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	80.2	80.47
TraesCS5B01G481000.1	Wheat	cytosol	80.2	80.47
HORVU5Hr1G111620.1	Barley	cytosol	80.2	80.47
TraesCS5D01G481300.1	Wheat	cytosol	80.2	80.47
Bra007497.1-P	Field mustard	cytosol	79.87	80.41
CDX71855	Canola	cytosol	79.7	80.24
Bra003397.1-P	Field mustard	cytosol	79.53	80.07
CDX67820	Canola	cytosol	79.36	79.9
CDX98401	Canola	cytosol	79.19	79.73
CDX79777	Canola	cytosol	79.36	79.5
AT3G59970.3	Thale cress	cytosol	78.86	79.39
Bra004810.1-P	Field mustard	cytosol	73.99	79.32
CDY17879	Canola	cytosol	78.86	79.12
CDY30457	Canola	cytosol	78.19	78.32
CDY23420	Canola	cytosol	78.19	78.32
Bra037664.1-P	Field mustard	cytosol	78.02	78.15
Zm00001d034602_P003	Maize	cytosol	78.69	75.04
VIT_05s0094g01600.t01	Wine grape	cytosol	8.72	63.41
Zm00001d042247_P001	Maize	extracellular, golgi	9.9	50.43
Zm00001d013002_P001	Maize	golgi, mitochondrion	9.73	49.57

Protein Annotations

KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	EntrezGene:100782073	Gene3D:3.20.20.220	MapMan:7.5.7.4	EMBL:ACUP02002775
InterPro:FAD-linked_oxidoreductase-like	InterPro:Fadh2_euk	EnsemblPlantsGene:GLYMA_04G256100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004489
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006555
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0035999
GO:GO:0055114	UniProt:I1JZE1	EnsemblPlants:KRH64810	ProteinID:KRH64810	ProteinID:KRH64810.1	InterPro:Mehydrof_redctse
PFAM:PF02219	PANTHER:PTHR21091	PANTHER:PTHR21091:SF31	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF51730
TIGRFAMs:TIGR00677	UniParc:UPI00023C004D	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:52231505..52236969

Molecular Weight (calculated)

67099.3 Da

IEP (calculated)

5.980

GRAVY (calculated)

-0.259

Length

596 amino acids

Sequence
(BLAST)

001: MKIIEKIRAA SADPNRVVFS FEFFPPKTED GVDNLFERMD RMVAHNPSFC DITWGAGGTT ADLTLEIANK MQNIVCVETM MHLTCTNMPV EKIDHALHTI
101: KSNGLQNVLA LRGDPPHGQD KFVQVEGGFA CARDLVQHIR AKYGDYFGIT IAGYPEAHPD VIESDGLATP EGYRNDLAYL KSKVDAGADL IVTQLFYDTD
201: IFLKFVNDCR QIGITCPIVP GIMPINNYKG FIRMTGFCKT KIPADIMAAL EPIKDNEEAV KAYGIHLGTE MCKKILAHGI KTLHLYTLNM EKSALAILMN
301: LGLIEESKVS RSLPWRRPAN VFRVKEDVRP IFWANRPKSY ISRTIGWDQY PHGRWGDSCN PSYGALSDYQ FMRPRARDKK LVEEWAVPLK SVEDIYEVRF
401: RLYCLGKLRS NPWSELDGLQ PETKIINEQL EKINTKGFLT INSQPAVNGE KSDSPTVGWG GPGGYVYQKA YVEFFCSKEK LDALVDKCKD RTSLTYMAVN
501: KDGSWKSNVG QTDVNAVTWG VFPAKEIIQP TIVDPVSFNV WKDEAFEIWS RGWASLYPED EASRKLVEEV GGSHFLVSLV DNDYINGDLF AVFADF

Best Arabidopsis Sequence Match ( AT2G44160.1 )
(BLAST)

001: MKVIDKIQSL ADEGKTAFSF EFFPPKTEDG VDNLFERMDR MVAYGPTFCD ITWGAGGSTA DLTLDIASRM QNVVCVESMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFDC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IGENGLASNE AYQSDLEYLK KKIDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGISCPIVPG IMPINNYRGF LRMTGFCKTK IPVEVMAALE PIKDNEEAVK AYGIHLGTEM CKKMLAHGVK SLHLYTLNME KSALAILMNL
301: GMIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWEDFP QGRWGDSRSA SYGALSDHQF SRPRARDKKL QQEWVVPLKS VEDIQEKFKE
401: LCLGNLKSSP WSELDGLQPE TRIINEQLIK VNSKGFLTIN SQPSVNAERS DSPTVGWGGP VGYVYQKAYL EFFCSKEKLD AVVEKCKALP SITYMAVNKG
501: EQWVSNTAQA DVNAVTWGVF PAKEIIQPTI VDPASFNVWK DEAFETWSRS WANLYPEADP SRNLLEEVKN SYYLVSLVEN DYINGDIFAV FADL

Arabidopsis Description

MTHFR2Methylenetetrahydrofolate reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:O80585]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.