CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	97.82	97.65
PGSC0003DMT400041701	Potato	cytosol	83.87	84.01
Zm00001d012999_P001	Maize	cytosol	40.5	83.97
Solyc11g008870.1.1	Tomato	extracellular, plastid	83.7	83.84
GSMUA_Achr11P...	Banana	cytosol	77.14	82.85
PGSC0003DMT400060046	Potato	cytosol	83.03	82.75
Solyc05g055730.2.1	Tomato	cytosol, unclear	82.69	82.55
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	82.02	82.15
EER90654	Sorghum	cytosol	81.68	81.96
GSMUA_Achr7P21790_001	Banana	cytosol	81.85	81.85
CDY41193	Canola	cytosol	80.5	80.91
Bra007497.1-P	Field mustard	cytosol	80.34	80.74
CDX71855	Canola	cytosol	80.17	80.57
AT2G44160.1	Thale cress	cytosol	80.17	80.3
Bra003397.1-P	Field mustard	cytosol	79.83	80.24
TraesCS5B01G481000.1	Wheat	cytosol	80.0	80.13
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	80.0	80.13
TraesCS5D01G481300.1	Wheat	cytosol	80.0	80.13
HORVU5Hr1G111620.1	Barley	cytosol	80.0	80.13
CDX67820	Canola	cytosol	79.66	80.07
CDX98401	Canola	cytosol	79.5	79.9
AT3G59970.3	Thale cress	cytosol	79.16	79.56
CDX79777	Canola	cytosol	79.16	79.16
Bra004810.1-P	Field mustard	cytosol	73.78	78.96
CDY17879	Canola	cytosol	78.82	78.96
CDY30457	Canola	cytosol	77.98	77.98
CDY23420	Canola	cytosol	77.98	77.98
Bra037664.1-P	Field mustard	cytosol	77.82	77.82
Zm00001d034602_P003	Maize	cytosol	78.49	74.72
VIT_05s0094g01600.t01	Wine grape	cytosol	8.74	63.41
Zm00001d042247_P001	Maize	extracellular, golgi	9.75	49.57
Zm00001d013002_P001	Maize	golgi, mitochondrion	9.58	48.72

Protein Annotations

KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	EntrezGene:100797489	Gene3D:3.20.20.220	MapMan:7.5.7.4	EMBL:ACUP02004117
InterPro:FAD-linked_oxidoreductase-like	InterPro:Fadh2_euk	EnsemblPlantsGene:GLYMA_06G325300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004489
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006555
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0035999
GO:GO:0055114	UniProt:I1KG02	EnsemblPlants:KRH56478	ProteinID:KRH56478	ProteinID:KRH56478.1	InterPro:Mehydrof_redctse
PFAM:PF02219	PANTHER:PTHR21091	PANTHER:PTHR21091:SF31	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF51730
TIGRFAMs:TIGR00677	UniParc:UPI000233946D	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51303061..51309327

Molecular Weight (calculated)

66940.1 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.240

Length

595 amino acids

Sequence
(BLAST)

001: MKIIEKIHAA SADPNRVVFS FEFFPPKTED GVDNLFERMD RMVVHNPSFC DITWGAGGTT ADLTLEIANK MQNIVCVETM MHLTCTNMPV EKIDHALHTI
101: KSNGLQNVLA LRGDPPHGQD KFVQVEGGFA CARDLVQHIR AKYGDYFGIT VAGYPEAHPD VIESDGLATS EGYQNDLAYL KSKVDAGADL IVTQLFYDTD
201: IFLKFVNDCR QIGITCPIVP GIMPINNYKG FIRMTGFCKT KIPADIMAAL EPIKDNEEAV KAYGIHLGTE MCKKILAHGI NTLHLYTLNM EKSALAILMN
301: LGLIEETKVS RSLPWRRPAN VFRVKEDVRP IFWANRPKSY ISRTIGWDQY PHGRWGDSCN PSYGALSDYQ FMRPRARDKK LVEEWAVPLK SIEDIYERFR
401: LYCLGKLRSN PWSELDGLQP ETKIINELLE KINTKGFLTI NSQPAVNGEK SDSPTVGWGG PGGYVYQKAY VEFFCSKEKL DALVDKCKDR TSLTYMAVNK
501: DGSWKSNVGQ TDVNAVTWGV FPAKEIIQPT IVDPVSFNVW KDEAFEIWSR GWASLYPEGD ASRKLVEEVG GSYFLVSLVD NDYINGDLFT VFADF

Best Arabidopsis Sequence Match ( AT2G44160.1 )
(BLAST)

001: MKVIDKIQSL ADEGKTAFSF EFFPPKTEDG VDNLFERMDR MVAYGPTFCD ITWGAGGSTA DLTLDIASRM QNVVCVESMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFDC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IGENGLASNE AYQSDLEYLK KKIDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGISCPIVPG IMPINNYRGF LRMTGFCKTK IPVEVMAALE PIKDNEEAVK AYGIHLGTEM CKKMLAHGVK SLHLYTLNME KSALAILMNL
301: GMIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWEDFP QGRWGDSRSA SYGALSDHQF SRPRARDKKL QQEWVVPLKS VEDIQEKFKE
401: LCLGNLKSSP WSELDGLQPE TRIINEQLIK VNSKGFLTIN SQPSVNAERS DSPTVGWGGP VGYVYQKAYL EFFCSKEKLD AVVEKCKALP SITYMAVNKG
501: EQWVSNTAQA DVNAVTWGVF PAKEIIQPTI VDPASFNVWK DEAFETWSRS WANLYPEADP SRNLLEEVKN SYYLVSLVEN DYINGDIFAV FADL

Arabidopsis Description

MTHFR2Methylenetetrahydrofolate reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:O80585]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.