Factsheet for VIT_05s0094g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042247_P001	Maize	extracellular, golgi	41.46	29.06
Zm00001d013002_P001	Maize	golgi, mitochondrion	41.46	29.06
PGSC0003DMT400041701	Potato	cytosol	69.51	9.6
GSMUA_Achr11P...	Banana	cytosol	64.63	9.57
Solyc11g008870.1.1	Tomato	extracellular, plastid	68.29	9.43
VIT_15s0024g00070.t01	Wine grape	cytosol	67.07	9.26
TraesCS5D01G481300.1	Wheat	cytosol	65.85	9.09
TraesCS5B01G481000.1	Wheat	cytosol	65.85	9.09
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	65.85	9.09
HORVU5Hr1G111620.1	Barley	cytosol	65.85	9.09
Solyc05g055730.2.1	Tomato	cytosol, unclear	65.85	9.06
PGSC0003DMT400060046	Potato	cytosol	65.85	9.05
EER90654	Sorghum	cytosol	64.63	8.94
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	64.63	8.92
GSMUA_Achr7P21790_001	Banana	cytosol	64.63	8.91
Bra004810.1-P	Field mustard	cytosol	59.76	8.81
KRH56478	Soybean	cytosol, nucleus	63.41	8.74
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	63.41	8.72
Zm00001d034602_P003	Maize	cytosol	64.63	8.48
CDY17879	Canola	cytosol	59.76	8.25
CDY30457	Canola	cytosol	59.76	8.24
CDY23420	Canola	cytosol	59.76	8.24
CDX79777	Canola	cytosol	59.76	8.24
Bra037664.1-P	Field mustard	cytosol	59.76	8.24
CDY41193	Canola	cytosol	58.54	8.11
CDX71855	Canola	cytosol	58.54	8.11
Bra007497.1-P	Field mustard	cytosol	58.54	8.11
CDX98401	Canola	cytosol	57.32	7.94
AT2G44160.1	Thale cress	cytosol	57.32	7.91
Bra003397.1-P	Field mustard	cytosol	56.1	7.77
CDX67820	Canola	cytosol	56.1	7.77
AT3G59970.3	Thale cress	cytosol	56.1	7.77
Zm00001d012999_P001	Maize	cytosol	9.76	2.79

Protein Annotations

ArrayExpress:VIT_05s0094g01600	EMBL:FN595507	EnsemblPlants:VIT_05s0094g01600.t01	EnsemblPlantsGene:VIT_05s0094g01600	ProteinID:CCB49432	ProteinID:CCB49432.1
UniParc:UPI0002109AEF	UniProt:F6HAZ6	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:+:24879004..24891429

Molecular Weight (calculated)

9245.2 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.374

Length

82 amino acids

Sequence
(BLAST)

1: MDLHTKRKVN LLYLMHSCNP SYGALIDYQR VGWGGAGGYV YQKANAELFC TNEKLNGLTE KCKAFPSLTY MAMNKEGAWM SN

Best Arabidopsis Sequence Match ( AT3G59970.3 )
(BLAST)

001: MKVVDKIKSV TEQGQTAFSF EFFPPKTEDG VENLFERMDR LVSYGPTFCD ITWGAGGSTA DLTLEIASRM QNVICVETMM HLTCTNMPIE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFAC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IEADGLATPE SYQSDLAYLK KKVDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGINCPIVPG IMPISNYKGF LRMAGFCKTK IPAELTAALE PIKDNDEAVK AYGIHFATEM CKKILAHGIT SLHLYTLNVD KSAIGILMNL
301: GLIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWNDFP HGRWGDSHSA AYSTLSDYQF ARPKGRDKKL QQEWVVPLKS IEDVQEKFKE
401: LCIGNLKSSP WSELDGLQPE TKIINEQLGK INSNGFLTIN SQPSVNAAKS DSPAIGWGGP GGYVYQKAYL EFFCSKDKLD TLVEKSKAFP SITYMAVNKS
501: ENWVSNTGES DVNAVTWGVF PAKEVIQPTI VDPASFKVWK DEAFEIWSRS WANLYPEDDP SRKLLEEVKN SYYLVSLVDN NYINGDIFSV FA

Arabidopsis Description

MTHFR1Methylenetetrahydrofolate reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.