Factsheet for Solyc11g008870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 5
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041701	Potato	cytosol	98.48	98.48
Solyc05g055730.2.1	Tomato	cytosol, unclear	87.88	87.58
VIT_15s0024g00070.t01	Wine grape	cytosol	84.51	84.51
GSMUA_Achr11P...	Banana	cytosol	78.28	83.94
KRH64810	Soybean	cytosol, endoplasmic reticulum, nucleus	84.01	83.72
KRH56478	Soybean	cytosol, nucleus	83.84	83.7
GSMUA_Achr7P21790_001	Banana	cytosol	83.33	83.19
Zm00001d012999_P001	Maize	cytosol	39.73	82.23
EER90654	Sorghum	cytosol	81.48	81.62
Os03t0815200-01	Rice	cytosol, extracellular, nucleus, plasma membrane	81.31	81.31
TraesCS5B01G481000.1	Wheat	cytosol	81.14	81.14
TraesCS5D01G481300.1	Wheat	cytosol	80.98	80.98
TraesCS5A01G468400.1	Wheat	cytosol, golgi, unclear	80.98	80.98
HORVU5Hr1G111620.1	Barley	cytosol	80.98	80.98
AT2G44160.1	Thale cress	cytosol	80.13	80.13
CDY41193	Canola	cytosol	79.8	80.07
Bra007497.1-P	Field mustard	cytosol	79.63	79.9
CDX71855	Canola	cytosol	79.46	79.73
Bra004810.1-P	Field mustard	cytosol	74.41	79.5
CDX79777	Canola	cytosol	79.63	79.5
CDY17879	Canola	cytosol	79.46	79.46
CDX98401	Canola	cytosol	78.45	78.72
CDX67820	Canola	cytosol	78.45	78.72
Bra003397.1-P	Field mustard	cytosol	78.45	78.72
AT3G59970.3	Thale cress	cytosol	78.11	78.38
CDY30457	Canola	cytosol	78.28	78.15
CDY23420	Canola	cytosol	78.11	77.98
Bra037664.1-P	Field mustard	cytosol	78.11	77.98
Zm00001d034602_P003	Maize	cytosol	78.11	74.24
VIT_05s0094g01600.t01	Wine grape	cytosol	9.43	68.29
Zm00001d042247_P001	Maize	extracellular, golgi	9.76	49.57
Zm00001d013002_P001	Maize	golgi, mitochondrion	9.6	48.72

Protein Annotations

KEGG:00670+1.5.1.20	KEGG:00720+1.5.1.20	Gene3D:3.20.20.220	MapMan:7.5.7.4	InterPro:FAD-linked_oxidoreductase-like	InterPro:Fadh2_euk
GO:GO:0003674	GO:GO:0003824	GO:GO:0004489	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006555	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0035999	GO:GO:0055114	UniProt:K4D5E7	InterPro:Mehydrof_redctse
PFAM:PF02219	PANTHER:PTHR21091	PANTHER:PTHR21091:SF31	SUPFAM:SSF51730	EnsemblPlantsGene:Solyc11g008870.1	EnsemblPlants:Solyc11g008870.1.1
TIGRFAMs:TIGR00677	UniParc:UPI000276936C	:	:	:	:

Description

Methylenetetrahydrofolate reductase [Source:UniProtKB/TrEMBL;Acc:K4D5E7]

Coordinates

chr11:-:3044787..3049095

Molecular Weight (calculated)

67218.7 Da

IEP (calculated)

5.587

GRAVY (calculated)

-0.271

Length

594 amino acids

Sequence
(BLAST)

001: MKVIEKIQEA AKTDKVIFSF EFFPPKTDDG VENLFERMER MVAHGPSFCD ITWGAGGSTA DLTLEIVNRM QNMVCVESMM HLTCTNMPVE KIDHALDTIK
101: ANGIQNVLAL RGDPPHGQDK FVQVEGGFAC ALDLVKHMRA KYGDYFGITV AGYPEAHPDV IPANGIATKE IYENDLAYLK KKVDAGADVI VTQLFYDTDI
201: FLKFVNDCRQ IGINCPIVPG IMPINNYKGF LRMTGFCKTK IPDEIMAALE PIKDNEEAVK AYGIHLGTEM CKKILATGIK TLHLYTLNME KSALAILMNL
301: GLIEESKISR PLPWRRPANI FRVKEDVRPI FWANRPKSYI SRTTGWDEYP HGRWSNAQNP SYGALTDYQF MRARSRDKKL QEEWAAALNS VEDIYEKFKD
401: YCLGKLRSCP WSELDGLQPE TKIINEKLGQ VNTKGFLTIN SQPAVNAEKS DSPSVGWGGP GGYVYQKAYL EFFCSQEKLN ALVEKCKSFP YLTYMAVNKE
501: GNWISNVNQT DINAVTWGVF PAKEIIQPTV VDPASFMIWK DEAFEIWSRG WAQLYPETDP SRKLLEQVQN SYFLVSLVDN DYINGDLFSI FKDI

Best Arabidopsis Sequence Match ( AT2G44160.1 )
(BLAST)

001: MKVIDKIQSL ADEGKTAFSF EFFPPKTEDG VDNLFERMDR MVAYGPTFCD ITWGAGGSTA DLTLDIASRM QNVVCVESMM HLTCTNMPVE KIDHALETIR
101: SNGIQNVLAL RGDPPHGQDK FVQVEGGFDC ALDLVNHIRS KYGDYFGITV AGYPEAHPDV IGENGLASNE AYQSDLEYLK KKIDAGADLI VTQLFYDTDI
201: FLKFVNDCRQ IGISCPIVPG IMPINNYRGF LRMTGFCKTK IPVEVMAALE PIKDNEEAVK AYGIHLGTEM CKKMLAHGVK SLHLYTLNME KSALAILMNL
301: GMIDESKISR SLPWRRPANV FRTKEDVRPI FWANRPKSYI SRTKGWEDFP QGRWGDSRSA SYGALSDHQF SRPRARDKKL QQEWVVPLKS VEDIQEKFKE
401: LCLGNLKSSP WSELDGLQPE TRIINEQLIK VNSKGFLTIN SQPSVNAERS DSPTVGWGGP VGYVYQKAYL EFFCSKEKLD AVVEKCKALP SITYMAVNKG
501: EQWVSNTAQA DVNAVTWGVF PAKEIIQPTI VDPASFNVWK DEAFETWSRS WANLYPEADP SRNLLEEVKN SYYLVSLVEN DYINGDIFAV FADL

Arabidopsis Description

MTHFR2Methylenetetrahydrofolate reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:O80585]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.