Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16237 | Sorghum | nucleus, plastid | 85.81 | 87.62 |
| Zm00001d030849_P001 | Maize | nucleus | 82.61 | 85.34 |
| TraesCS5B01G078200.1 | Wheat | plastid | 60.87 | 70.56 |
| TraesCS5A01G072000.1 | Wheat | plastid | 60.41 | 70.21 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 60.64 | 70.11 |
| Os12t0581800-01 | Rice | nucleus, plastid | 59.04 | 67.01 |
| GSMUA_Achr10P... | Banana | nucleus | 45.31 | 62.46 |
| Zm00001d033365_P002 | Maize | nucleus | 52.86 | 62.1 |
| Zm00001d013744_P001 | Maize | nucleus | 50.11 | 61.34 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 49.89 | 59.73 |
| KRH52056 | Soybean | nucleus | 28.83 | 59.72 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 53.32 | 59.59 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 60.41 | 58.15 |
| CDY06752 | Canola | nucleus | 36.38 | 55.79 |
| PGSC0003DMT400055428 | Potato | nucleus | 46.0 | 54.62 |
| Solyc04g078310.2.1 | Tomato | nucleus | 46.22 | 54.45 |
| KRH15427 | Soybean | nucleus, plastid | 45.31 | 54.4 |
| AT5G43080.1 | Thale cress | nucleus | 43.71 | 53.8 |
| PGSC0003DMT400030222 | Potato | nucleus | 43.48 | 53.67 |
| Solyc12g088530.1.1 | Tomato | nucleus | 43.25 | 53.39 |
| PGSC0003DMT400030176 | Potato | nucleus | 43.48 | 53.37 |
| CDY22369 | Canola | nucleus | 42.56 | 52.99 |
| KRH61375 | Soybean | nucleus | 39.59 | 52.91 |
| Solyc12g088500.1.1 | Tomato | nucleus | 42.79 | 52.82 |
| Solyc12g088520.1.1 | Tomato | nucleus | 42.56 | 52.39 |
| Bra033658.1-P | Field mustard | nucleus | 42.56 | 52.25 |
| Solyc12g088470.1.1 | Tomato | nucleus | 43.02 | 52.22 |
| KRH05614 | Soybean | nucleus | 43.71 | 52.04 |
| KRH61369 | Soybean | nucleus | 38.44 | 51.38 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 40.05 | 51.32 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 43.25 | 51.08 |
| KRH52055 | Soybean | nucleus | 41.42 | 50.56 |
| Bra032220.1-P | Field mustard | nucleus | 40.96 | 50.14 |
| CDY17091 | Canola | nucleus | 40.96 | 50.0 |
| CDY23653 | Canola | nucleus | 40.73 | 49.86 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 41.42 | 49.73 |
| CDY17037 | Canola | nucleus, plastid | 41.42 | 49.73 |
| CDY47595 | Canola | nucleus, plastid | 41.88 | 49.33 |
| Bra040793.1-P | Field mustard | nucleus | 40.96 | 49.31 |
| CDY47596 | Canola | nucleus | 40.96 | 49.31 |
| CDY17039 | Canola | nucleus | 40.73 | 49.04 |
| CDY66770 | Canola | nucleus | 40.5 | 48.9 |
| Bra040710.1-P | Field mustard | nucleus | 41.42 | 48.79 |
| KRH61371 | Soybean | nucleus | 38.67 | 48.42 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 39.82 | 47.93 |
| CDY06757 | Canola | nucleus, plastid | 39.82 | 47.93 |
| AT1G47220.1 | Thale cress | nucleus | 35.7 | 47.71 |
| AT1G47210.2 | Thale cress | nucleus | 40.05 | 47.04 |
| KRH61373 | Soybean | nucleus, plastid | 39.82 | 46.4 |
| PGSC0003DMT400056625 | Potato | nucleus | 38.9 | 44.74 |
| Solyc10g049360.1.1 | Tomato | nucleus | 38.67 | 44.71 |
| Zm00001d032128_P001 | Maize | cytosol | 13.96 | 38.61 |
| Zm00001d019469_P001 | Maize | extracellular | 11.21 | 34.27 |
| Zm00001d048127_P001 | Maize | plastid | 35.01 | 31.94 |
| Zm00001d040381_P001 | Maize | plastid | 38.44 | 31.52 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 14.42 | 31.5 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 34.32 | 30.93 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 35.47 | 29.75 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 33.87 | 29.02 |
| Zm00001d010404_P001 | Maize | nucleus | 29.75 | 26.8 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 25.63 | 24.94 |
| Zm00001d043164_P002 | Maize | nucleus | 26.54 | 23.97 |
| Zm00001d036360_P002 | Maize | nucleus | 22.43 | 23.11 |
| Zm00001d010656_P001 | Maize | nucleus | 23.57 | 23.09 |
| Zm00001d026129_P001 | Maize | nucleus | 22.2 | 22.77 |
| Zm00001d002662_P010 | Maize | nucleus | 22.88 | 21.98 |
| Zm00001d008221_P001 | Maize | nucleus | 22.88 | 20.88 |
| Zm00001d020033_P001 | Maize | nucleus | 22.43 | 18.01 |
| Zm00001d020996_P001 | Maize | nucleus | 21.97 | 17.65 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:103650257 | MapMan:13.1.1.1.1 | UniProt:A0A1D6MVJ5 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| ProteinID:ONM32831.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000221BAB2 | EnsemblPlantsGene:Zm00001d041334 |
| EnsemblPlants:Zm00001d041334_P001 | EnsemblPlants:Zm00001d041334_T001 | SEG:seg | : | : | : |
Description
Putative cyclin-A3-1
Coordinates
chr3:-:112555101..112557464
Molecular Weight (calculated)
47432.8 Da
IEP (calculated)
7.751
GRAVY (calculated)
-0.130
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKENAAPV GALGVAGPRL TRAAAKRAAA MAAEGPDDAK RRRVALGELP ALANNAALAP SRPVKPSKPA SRPARPGASE ACGPAAAAEA ERCASFSPPR
101: AADAESNSAS YSPPRTTADT AFSAPPRAAD AESNSASYSP PLATADTAFS APPRAVAPAD LQLSGSYASD IYTYLRSLEV DPQRRSRSDY IEAVQADVTA
201: HMRSILVDWL VEVAEEYKLV ADTLYLTISY VDRFLSVNAL GRDKLQLLGV ASMLIAAKFE EISPPHPEDF CYITDNTYTK EELLKMESDI LKLLKFELGN
301: PTIKTFLRRF IRSAHEDKKG SILLMEFLGS YLAELSLLDY GCLRFLPSVV AASVMFVARL TIDPNTNPWN TKLQKMTGYK VSELKDCIVA IHDLQLNRKC
401: PSLTAIRDKY KQHKFKCVSL ILVPVVIPTS YFEDLAE
101: AADAESNSAS YSPPRTTADT AFSAPPRAAD AESNSASYSP PLATADTAFS APPRAVAPAD LQLSGSYASD IYTYLRSLEV DPQRRSRSDY IEAVQADVTA
201: HMRSILVDWL VEVAEEYKLV ADTLYLTISY VDRFLSVNAL GRDKLQLLGV ASMLIAAKFE EISPPHPEDF CYITDNTYTK EELLKMESDI LKLLKFELGN
301: PTIKTFLRRF IRSAHEDKKG SILLMEFLGS YLAELSLLDY GCLRFLPSVV AASVMFVARL TIDPNTNPWN TKLQKMTGYK VSELKDCIVA IHDLQLNRKC
401: PSLTAIRDKY KQHKFKCVSL ILVPVVIPTS YFEDLAE
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.