Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020033_P001 | Maize | nucleus | 98.71 | 98.71 |
| Zm00001d008221_P001 | Maize | nucleus | 79.41 | 90.19 |
| Zm00001d019469_P001 | Maize | extracellular | 23.53 | 89.51 |
| EES02793 | Sorghum | nucleus | 70.4 | 82.72 |
| Os01t0281200-01 | Rice | nucleus | 48.71 | 62.65 |
| TraesCS3D01G195200.1 | Wheat | plastid | 46.32 | 61.02 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 46.32 | 60.87 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 39.15 | 53.79 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 45.96 | 50.81 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 16.73 | 45.73 |
| KRH66715 | Soybean | nucleus | 31.07 | 43.11 |
| PGSC0003DMT400058457 | Potato | nucleus | 32.54 | 42.34 |
| PGSC0003DMT400015245 | Potato | nucleus | 34.01 | 42.14 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 34.93 | 41.94 |
| PGSC0003DMT400018480 | Potato | nucleus | 32.72 | 41.88 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 32.17 | 41.87 |
| Solyc10g078330.1.1 | Tomato | nucleus | 32.17 | 41.37 |
| Solyc06g073610.2.1 | Tomato | nucleus | 33.46 | 41.36 |
| KRG95055 | Soybean | nucleus | 34.38 | 41.1 |
| AT2G26760.1 | Thale cress | nucleus | 29.23 | 41.09 |
| AT3G11520.1 | Thale cress | nucleus | 31.07 | 40.82 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 34.38 | 40.48 |
| Solyc01g009040.2.1 | Tomato | nucleus | 32.35 | 40.46 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 33.27 | 40.31 |
| KRH66713 | Soybean | nucleus | 33.64 | 40.31 |
| Bra028741.1-P | Field mustard | nucleus | 30.7 | 40.24 |
| Bra002046.1-P | Field mustard | nucleus | 29.04 | 40.2 |
| KRH73516 | Soybean | nucleus | 32.35 | 40.0 |
| KRH14611 | Soybean | nucleus | 32.17 | 39.86 |
| CDY69551 | Canola | nucleus | 25.92 | 39.72 |
| CDY62475 | Canola | nucleus | 25.37 | 39.32 |
| CDX69311 | Canola | nucleus | 30.15 | 39.14 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 29.78 | 39.13 |
| Solyc10g080950.1.1 | Tomato | nucleus | 33.09 | 38.96 |
| KRH66718 | Soybean | plastid | 26.65 | 38.87 |
| PGSC0003DMT400072211 | Potato | nucleus | 32.9 | 38.58 |
| CDX75659 | Canola | nucleus | 30.33 | 38.55 |
| Bra011769.1-P | Field mustard | nucleus | 30.33 | 38.55 |
| AT5G06150.1 | Thale cress | nucleus | 31.43 | 38.43 |
| CDX80988 | Canola | plastid | 30.15 | 38.32 |
| CDY11354 | Canola | plastid | 30.33 | 38.11 |
| AT4G37490.1 | Thale cress | nucleus | 29.96 | 38.08 |
| Zm00001d043164_P002 | Maize | nucleus | 33.46 | 37.6 |
| Zm00001d010656_P001 | Maize | nucleus | 30.7 | 37.44 |
| KRG95056 | Soybean | cytosol | 25.55 | 35.92 |
| Zm00001d026129_P001 | Maize | nucleus | 27.02 | 34.51 |
| Zm00001d036360_P002 | Maize | nucleus | 25.37 | 32.55 |
| Zm00001d002662_P010 | Maize | nucleus | 27.21 | 32.53 |
| Zm00001d032128_P001 | Maize | cytosol | 7.9 | 27.22 |
| Zm00001d033365_P002 | Maize | nucleus | 18.38 | 26.88 |
| CDY14091 | Canola | plastid | 30.88 | 25.61 |
| Zm00001d013744_P001 | Maize | nucleus | 16.73 | 25.49 |
| AT1G34460.5 | Thale cress | cytosol | 22.06 | 24.1 |
| CDY04980 | Canola | nucleus | 30.51 | 23.12 |
| Zm00001d030849_P001 | Maize | nucleus | 17.65 | 22.7 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 21.32 | 22.26 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 17.65 | 21.97 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 7.9 | 21.5 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 18.57 | 20.82 |
| Zm00001d040381_P001 | Maize | plastid | 19.85 | 20.26 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 18.01 | 19.22 |
| Zm00001d010404_P001 | Maize | nucleus | 16.36 | 18.35 |
| Zm00001d048127_P001 | Maize | plastid | 15.99 | 18.16 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | Gene3D:2.30.29.30 | UniProt:A0A1D6I7N1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR011993 | ProteinID:ONM56055.1 | PFAM:PF00134 | PFAM:PF02984 | InterPro:PH-like_dom_sf | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF211 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | SUPFAM:SSF50729 |
| UniParc:UPI000844300B | EnsemblPlantsGene:Zm00001d020996 | EnsemblPlants:Zm00001d020996_P001 | EnsemblPlants:Zm00001d020996_T001 | SEG:seg | : |
Description
Cyclin-B1-4
Coordinates
chr7:-:139823519..139828471
Molecular Weight (calculated)
61716.3 Da
IEP (calculated)
9.596
GRAVY (calculated)
-0.196
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSTEDMRE APTVTEVLYK WTNIGKGWQS RWFAIHDRVL SYSEWIHAFH RASYAKSWNS AMFLQCQQVQ KDAARLVRKP MDTFPQPAAA RGRRALVDVG
101: NLMNGRPSLV NHQKQAVAAA ATSHKPLNVG NKKPLVPQAA ARGMRPLADV TNLMINDRAA PANRQKPLDA VFNRNGKAVK LKECKVKPEV IVTIPDSEKE
201: KKGKLPGGQR VCRRVPTLFD NLTKCSRYEH KQNSKVKVVS FFFILRMPVY PFCVLCVFTK ASDGITTPKK KDPYDIDAPD SCNELAVVEY VEDIYKFYKS
301: TEGTCLPLSS YMSSQAEISE RMRAILIDWI IEVQYRLTLM PETLYLTVYI IDQYLSMESV PRKELQLVGI SAMLIASKYE EIWAPLVKDL MCLCDNAFTR
401: DQVLTKEKAI LDRLHWNLTV PTMYMFIVRY LKAAMCDTEL ENMAFFYSEL ALVHYAMLVY PSSVTAVAAV YAARSTLGMN PPWTDILEHH TGLAEPQLLD
501: CARRLISFHT LAPESKQKAV YRKYSKPKLG SVTLQSPVKK LLSG
101: NLMNGRPSLV NHQKQAVAAA ATSHKPLNVG NKKPLVPQAA ARGMRPLADV TNLMINDRAA PANRQKPLDA VFNRNGKAVK LKECKVKPEV IVTIPDSEKE
201: KKGKLPGGQR VCRRVPTLFD NLTKCSRYEH KQNSKVKVVS FFFILRMPVY PFCVLCVFTK ASDGITTPKK KDPYDIDAPD SCNELAVVEY VEDIYKFYKS
301: TEGTCLPLSS YMSSQAEISE RMRAILIDWI IEVQYRLTLM PETLYLTVYI IDQYLSMESV PRKELQLVGI SAMLIASKYE EIWAPLVKDL MCLCDNAFTR
401: DQVLTKEKAI LDRLHWNLTV PTMYMFIVRY LKAAMCDTEL ENMAFFYSEL ALVHYAMLVY PSSVTAVAAV YAARSTLGMN PPWTDILEHH TGLAEPQLLD
501: CARRLISFHT LAPESKQKAV YRKYSKPKLG SVTLQSPVKK LLSG
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.