Factsheet for VIT_08s0040g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0125g00350.t01
VIT_01s0011g02180.t01
VIT_03s0017g00150.t01
VIT_04s0008g05010.t01
VIT_05s0020g00100.t01
VIT_05s0124g00240.t01
VIT_06s0061g00810.t01
VIT_07s0005g03000.t01
VIT_08s0007g06730.t01
VIT_08s0056g00210.t01
VIT_12s0057g00240.t01
VIT_15s0045g00310.t01
VIT_15s0046g01350.t01
VIT_16s0050g00030.t01
VIT_17s0000g01720.t01
VIT_17s0000g10250.t01
VIT_18s0001g13740.t01
VIT_18s0089g00210.t01
VIT_18s0122g00550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	VIT_05s0124g00240.t01	AT1G05805.1	20706207
AT3G11520.1	VIT_17s0000g01720.t01	AT1G56110.1	20706207
AT3G11520.1	VIT_15s0046g01350.t01	AT3G61650.1	20706207
AT3G11520.1	VIT_16s0050g00030.t01	AT4G25550.1	20706207
AT3G11520.1	VIT_18s0001g13740.t01	AT4G38900.1	20706207
AT3G11520.1	VIT_08s0007g06730.t01	AT5G06680.1	20706207
AT4G37490.1	VIT_18s0122g00550.t01	AT1G20930.1	20706207
AT4G37490.1	VIT_18s0122g00550.t01	AT1G76540.1	20706207
AT4G37490.1	VIT_15s0045g00310.t01	AT3G48750.1	12065421
AT4G37490.1	VIT_08s0056g00210.t01	AT3G54180.1	12065421
AT5G06150.1	VIT_00s0125g00350.t01	AT1G04810.1	20706207
AT5G06150.1	VIT_18s0122g00550.t01	AT1G20930.1	20706207
AT5G06150.1	VIT_01s0011g02180.t01	AT1G48920.1	20706207
AT5G06150.1	VIT_05s0020g00100.t01	AT1G48920.1	20706207
AT5G06150.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT5G06150.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G06150.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G06150.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT5G06150.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT5G06150.1	VIT_08s0056g00210.t01	AT3G54180.1	20706207
AT5G06150.1	VIT_17s0000g10250.t01	AT4G24820.1	20706207
AT5G06150.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT5G06150.1	VIT_04s0008g05010.t01	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01420.t01	Wine grape	nucleus	79.69	78.14
KRG95055	Soybean	nucleus	67.55	67.25
Solyc10g078330.1.1	Tomato	nucleus	62.47	66.9
PGSC0003DMT400018480	Potato	nucleus	62.69	66.82
KRH66713	Soybean	nucleus	66.67	66.52
Solyc10g080950.1.1	Tomato	nucleus	67.55	66.23
PGSC0003DMT400072211	Potato	nucleus	67.11	65.52
KRH66720	Soybean	endoplasmic reticulum, vacuole	27.81	63.32
KRH66718	Soybean	plastid	51.21	62.2
KRH66715	Soybean	nucleus	53.42	61.73
GSMUA_Achr4P10090_001	Banana	nucleus	56.73	60.47
CDY69551	Canola	nucleus	46.8	59.72
GSMUA_Achr7P21380_001	Banana	nucleus	60.04	59.52
CDY62475	Canola	nucleus	45.7	58.97
VIT_06s0009g02090.t01	Wine grape	nucleus	54.3	58.85
Bra028741.1-P	Field mustard	nucleus	53.64	58.55
AT3G11520.1	Thale cress	nucleus	53.42	58.45
GSMUA_Achr10P...	Banana	nucleus	58.06	58.06
Bra002046.1-P	Field mustard	nucleus	50.11	57.76
KRG95056	Soybean	cytosol	49.01	57.36
Zm00001d019469_P001	Maize	extracellular	18.1	57.34
GSMUA_Achr8P23970_001	Banana	nucleus	54.75	57.01
Bra005880.1-P	Field mustard	nucleus, plastid	51.88	56.76
TraesCSU01G217300.1	Wheat	cytosol	26.71	56.02
CDY11354	Canola	plastid	52.98	55.43
HORVU0Hr1G001680.1	Barley	nucleus	39.07	55.31
AT5G06150.1	Thale cress	nucleus	54.08	55.06
CDX80988	Canola	plastid	51.88	54.91
AT4G37490.1	Thale cress	nucleus	51.88	54.91
CDX69311	Canola	nucleus	50.55	54.65
GSMUA_Achr3P24980_001	Banana	nucleus	47.9	53.98
Bra011769.1-P	Field mustard	nucleus	50.99	53.97
CDX75659	Canola	nucleus	50.99	53.97
EES03772	Sorghum	nucleus, plastid	52.98	53.45
GSMUA_AchrUn_...	Banana	nucleus	34.88	53.02
Zm00001d012560_P002	Maize	nucleus, plastid	52.54	53.01
HORVU1Hr1G068080.1	Barley	plastid	39.74	52.63
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	48.12	51.9
HORVU3Hr1G078880.2	Barley	nucleus	51.66	51.66
TraesCS3D01G326600.1	Wheat	nucleus	51.88	51.65
TraesCS1D01G309300.1	Wheat	nucleus, plastid	49.67	51.61
TraesCS1A01G309800.1	Wheat	nucleus	49.67	51.61
TraesCS3B01G363200.3	Wheat	nucleus	52.32	51.41
TraesCS3A01G333000.2	Wheat	nucleus	52.1	51.3
TraesCS1B01G320900.1	Wheat	nucleus, plastid	49.01	50.92
TraesCS1D01G309400.1	Wheat	nucleus	48.79	50.57
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	48.79	50.46
TraesCS1B01G321000.1	Wheat	nucleus	48.12	50.0
HORVU0Hr1G026010.1	Barley	nucleus, plastid	48.79	49.89
HORVU1Hr1G068160.2	Barley	nucleus, plastid	48.79	49.89
KXG24389	Sorghum	nucleus	27.59	49.6
Os01t0281200-01	Rice	nucleus	45.7	48.94
Zm00001d043164_P002	Maize	nucleus	51.43	48.14
TraesCS3D01G195200.1	Wheat	plastid	43.49	47.7
TraesCS3A01G192100.1	Wheat	nucleus, plastid	43.05	47.1
Zm00001d010656_P001	Maize	nucleus	45.92	46.64
EES18429	Sorghum	mitochondrion	46.36	45.65
Os05t0493500-00	Rice	nucleus	48.12	44.76
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	32.01	44.07
EES02793	Sorghum	nucleus	42.6	41.68
Zm00001d008221_P001	Maize	nucleus	43.71	41.34
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	35.32	40.4
HORVU3Hr1G040990.2	Barley	nucleus, plastid	42.16	38.82
VIT_18s0001g14170.t01	Wine grape	nucleus	36.87	37.87
CDY14091	Canola	plastid	53.42	36.89
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	34.44	36.79
AT1G34460.5	Thale cress	cytosol	39.96	36.35
Zm00001d020033_P001	Maize	nucleus	42.16	35.11
Zm00001d020996_P001	Maize	nucleus	41.94	34.93
CDY04980	Canola	nucleus	53.42	33.7
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	26.49	32.88
VIT_03s0091g00280.t01	Wine grape	nucleus	22.08	29.33
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	23.62	28.92
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	22.96	25.94
VIT_19s0085g00690.t01	Wine grape	nucleus	34.44	25.83
VIT_09s0002g05240.t01	Wine grape	nucleus	26.05	24.08
VIT_18s0001g02060.t01	Wine grape	plastid	26.27	24.04

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100261859	wikigene:100261859	MapMan:13.1.1.1.2	ProteinID:CBI32811	ProteinID:CBI32811.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7TQU1	EMBL:FN596008
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100261859	wikigene:LOC100261859
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001983C0F	ArrayExpress:VIT_08s0040g00930	EnsemblPlantsGene:VIT_08s0040g00930
EnsemblPlants:VIT_08s0040g00930.t01	unigene:Vvi.13622	RefSeq:XP_002283152	RefSeq:XP_002283152.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:11925222..11928200

Molecular Weight (calculated)

49906.6 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.189

Length

453 amino acids

Sequence
(BLAST)

001: MASRPIVPQH HQPRGEALAG DGKQRKNGAA EGRNRRALGD IGNLVTVRGV DGKPQPQISR PVTRSFCAQL LANAQAAAAA ENNKKAVCVN VDGAPIITDG
101: GAAGKAPVAA KAAAQKKVTI KPKPEQVIEI SPDSEEVKQE KPVSKKKGRE GSSKKNVKTM TSILTARSKV ACGLTNKPKE QIVDIDAADA GNDLAAVEYV
201: EDIYKFYKLI ESESQVHDYM DSQAEINEKM RAILVDWLIE VHHKFELMPE TLYLTINIVD RFLSIKTVPR RELQLVGISA MLMASKYEEI WAPEVNDFVC
301: ISDRAYTHQQ ILMMEKAILG KLEWTLTVPT PYVFLVRFVK ASIPDTQMEH MVYFFAELGL TNYVTMMYCP SMLAASAVYA ARCTLSKSPV WDETLKVHTG
401: YSETQLLGCA KLLVSFHSIA AENKLKVVYR KYSQPQRSGV SLLPPAKSLL AAS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.