Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 100.0 | 100.0 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 88.71 | 90.14 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 88.49 | 89.91 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 86.46 | 87.84 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 85.78 | 86.96 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 61.63 | 85.31 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 83.07 | 84.4 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 78.1 | 82.38 |
| HORVU1Hr1G068080.1 | Barley | plastid | 62.75 | 81.29 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 79.91 | 80.82 |
| Zm00001d010656_P001 | Maize | nucleus | 59.82 | 59.42 |
| EES18429 | Sorghum | mitochondrion | 61.4 | 59.13 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 57.79 | 56.51 |
| Os05t0493500-00 | Rice | nucleus | 60.5 | 55.03 |
| PGSC0003DMT400058457 | Potato | nucleus | 48.98 | 51.91 |
| Solyc01g009040.2.1 | Tomato | nucleus | 49.66 | 50.57 |
| CDY69551 | Canola | nucleus | 39.5 | 49.3 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 49.89 | 48.79 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.9 | 48.74 |
| CDY62475 | Canola | nucleus | 38.6 | 48.72 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.63 | 48.06 |
| KRH14611 | Soybean | nucleus | 47.4 | 47.84 |
| KRH73516 | Soybean | nucleus | 47.18 | 47.5 |
| Solyc06g073610.2.1 | Tomato | nucleus | 47.18 | 47.5 |
| AT3G11520.1 | Thale cress | nucleus | 44.24 | 47.34 |
| AT2G26760.1 | Thale cress | nucleus | 41.31 | 47.29 |
| Bra028741.1-P | Field mustard | nucleus | 44.24 | 47.23 |
| Bra002046.1-P | Field mustard | nucleus | 41.76 | 47.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.6 | 46.98 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 44.24 | 46.89 |
| KRH66715 | Soybean | nucleus | 41.08 | 46.43 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.34 | 46.38 |
| KRG95055 | Soybean | nucleus | 47.4 | 46.15 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 48.08 | 46.1 |
| KRH66713 | Soybean | nucleus | 47.18 | 46.04 |
| PGSC0003DMT400018480 | Potato | nucleus | 44.02 | 45.88 |
| CDX80988 | Canola | plastid | 44.24 | 45.79 |
| Solyc10g078330.1.1 | Tomato | nucleus | 43.12 | 45.15 |
| CDY11354 | Canola | plastid | 44.02 | 45.03 |
| Solyc10g080950.1.1 | Tomato | nucleus | 46.73 | 44.81 |
| PGSC0003DMT400072211 | Potato | nucleus | 46.73 | 44.61 |
| AT5G06150.1 | Thale cress | nucleus | 44.02 | 43.82 |
| AT4G37490.1 | Thale cress | nucleus | 41.99 | 43.46 |
| CDX69311 | Canola | nucleus | 40.63 | 42.96 |
| Bra011769.1-P | Field mustard | nucleus | 40.86 | 42.29 |
| CDX75659 | Canola | nucleus | 40.86 | 42.29 |
| KRH66718 | Soybean | plastid | 35.44 | 42.09 |
| KRG95056 | Soybean | cytosol | 34.76 | 39.79 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 40.63 | 36.59 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 33.18 | 35.0 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 20.99 | 33.45 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 27.99 | 33.24 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 32.51 | 30.57 |
| CDY14091 | Canola | plastid | 44.24 | 29.88 |
| AT1G34460.5 | Thale cress | cytosol | 31.38 | 27.91 |
| CDY04980 | Canola | nucleus | 44.02 | 27.16 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 26.19 | 25.55 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 28.44 | 24.85 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 22.12 | 23.61 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | UniProt:A0A287E977 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:HORVU0Hr1G026010 |
| EnsemblPlants:HORVU0Hr1G026010.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B4712FA | SEG:seg |
Description
No Description!
Coordinates
chrchrUn:-:136806273..136808622
Molecular Weight (calculated)
48233.5 Da
IEP (calculated)
9.756
GRAVY (calculated)
-0.195
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRHNNQHA AAAPQPAANG GAEGPAGRQK GAAAGGRVAG GNRRVLGDIG NVVQTTVLDG KIQLPAGINR PITRSFGAQL LKKAQAEPSK NDVAVPPAAR
101: PAQKRVAKKD PVKAAAAPIP EPAAANIATG SDENRKPSEG AAAGAAPKIS RKKVVHTLTT VLNHRSKEAS IDDIDKLDGD NQLAVVDYIN DIYKYYKELQ
201: HECRPIDYMG SQPEVNPKMR AILMDWLVEV THKFELMPES MYLTIYVIDR FLSLQAVPRR ELQLVGIAAM LIACKYEEIW APEVGDFISI ADNSYSRQQI
301: LSMEKNILNS MAWNLTVPTP YVFLVRFAKA AGGDKELANM IFFFAEMALM EYKLVTVRPS LLAASAVYAA RCTLKRSPIW TETLKHHTGL AEPQLLEPAK
401: MLVMAHAAAP QSKLKAIYKK YSCEQYGRVS LHAPAVAPPQ NLA
101: PAQKRVAKKD PVKAAAAPIP EPAAANIATG SDENRKPSEG AAAGAAPKIS RKKVVHTLTT VLNHRSKEAS IDDIDKLDGD NQLAVVDYIN DIYKYYKELQ
201: HECRPIDYMG SQPEVNPKMR AILMDWLVEV THKFELMPES MYLTIYVIDR FLSLQAVPRR ELQLVGIAAM LIACKYEEIW APEVGDFISI ADNSYSRQQI
301: LSMEKNILNS MAWNLTVPTP YVFLVRFAKA AGGDKELANM IFFFAEMALM EYKLVTVRPS LLAASAVYAA RCTLKRSPIW TETLKHHTGL AEPQLLEPAK
401: MLVMAHAAAP QSKLKAIYKK YSCEQYGRVS LHAPAVAPPQ NLA
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.