Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 98.57 | 94.52 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 71.19 | 93.44 |
| HORVU1Hr1G068080.1 | Barley | plastid | 72.14 | 88.6 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 84.29 | 81.19 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 84.05 | 80.96 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 84.05 | 80.96 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 83.81 | 80.55 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 81.9 | 78.9 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 82.38 | 78.1 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 82.38 | 78.1 |
| EES18429 | Sorghum | mitochondrion | 62.38 | 56.96 |
| Zm00001d010656_P001 | Maize | nucleus | 60.48 | 56.95 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 60.48 | 56.07 |
| Os05t0493500-00 | Rice | nucleus | 63.57 | 54.83 |
| PGSC0003DMT400058457 | Potato | nucleus | 52.38 | 52.63 |
| Solyc01g009040.2.1 | Tomato | nucleus | 51.9 | 50.11 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 23.57 | 49.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.24 | 49.66 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 51.9 | 48.12 |
| PGSC0003DMT400015245 | Potato | nucleus | 50.24 | 48.06 |
| Solyc06g073610.2.1 | Tomato | nucleus | 50.24 | 47.95 |
| KRG95055 | Soybean | nucleus | 51.9 | 47.91 |
| KRH66713 | Soybean | nucleus | 51.67 | 47.8 |
| AT2G26760.1 | Thale cress | nucleus | 43.57 | 47.29 |
| KRH66715 | Soybean | nucleus | 44.05 | 47.19 |
| PGSC0003DMT400018480 | Potato | nucleus | 47.62 | 47.06 |
| KRH14611 | Soybean | nucleus | 49.05 | 46.92 |
| KRH73516 | Soybean | nucleus | 49.05 | 46.82 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 51.19 | 46.54 |
| CDY69551 | Canola | nucleus | 39.05 | 46.2 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.71 | 45.93 |
| Solyc10g080950.1.1 | Tomato | nucleus | 50.48 | 45.89 |
| Solyc10g078330.1.1 | Tomato | nucleus | 46.19 | 45.86 |
| CDY62475 | Canola | nucleus | 38.1 | 45.58 |
| Bra028741.1-P | Field mustard | nucleus | 45.0 | 45.54 |
| AT3G11520.1 | Thale cress | nucleus | 44.76 | 45.41 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 44.52 | 45.17 |
| PGSC0003DMT400072211 | Potato | nucleus | 49.76 | 45.04 |
| Bra002046.1-P | Field mustard | nucleus | 41.67 | 44.53 |
| AT4G37490.1 | Thale cress | nucleus | 45.0 | 44.16 |
| CDX80988 | Canola | plastid | 44.76 | 43.93 |
| CDY11354 | Canola | plastid | 45.0 | 43.65 |
| CDX69311 | Canola | nucleus | 43.33 | 43.44 |
| KRH66718 | Soybean | plastid | 38.57 | 43.43 |
| AT5G06150.1 | Thale cress | nucleus | 45.48 | 42.92 |
| CDX75659 | Canola | nucleus | 43.57 | 42.76 |
| Bra011769.1-P | Field mustard | nucleus | 43.57 | 42.76 |
| KRG95056 | Soybean | cytosol | 37.14 | 40.31 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 35.95 | 35.95 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 23.33 | 35.25 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 40.48 | 34.55 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 28.1 | 31.64 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 34.52 | 30.79 |
| CDY14091 | Canola | plastid | 45.24 | 28.96 |
| AT1G34460.5 | Thale cress | cytosol | 32.86 | 27.71 |
| CDY04980 | Canola | nucleus | 45.0 | 26.32 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 26.67 | 24.67 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 29.05 | 24.06 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 22.38 | 22.65 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G068010.7 | EnsemblPlantsGene:HORVU1Hr1G068010 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B46DC04 | UniProt:A0A287G2C0 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chrchr1H:+:479967349..479969823
Molecular Weight (calculated)
46092.1 Da
IEP (calculated)
9.899
GRAVY (calculated)
-0.114
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: GAVGPAGKQK GAAAGGRVAG GNRRVLGDIG NVVHANVLDG KIQLPAGINR PITRSFGAQL LKKAQAEPSK VGLAVPPAAR AALKPVARKV PVKPAAPRPE
101: LAAKIVTASD ENRKPSEGGA PKISRKKAVH TLTTVLNHRS KEACVHDIDK LDSDNELAVV DYIDDIYKYY NVAQHECRPI DYIGSQPEIS LKMRAILTDW
201: LVEVAHKFEL MPESLYLTMY AIDRFLSLQA AVPRRELQLV GMAAMLIACK YEETWAPEVN DFISIADNAY SRHQILSMEK NMLNSMEWNL TVPTPYVFLV
301: RFAKAAGSDK ELEQMIFFFA EMALMNYGLV TARPSLVAAS AVYAARCTLK RSPIWTETLK HHTGLTGLTE AQLLEPARSL VKAHAAAPES KLKAVYRKYS
401: SEQYGRVALR PPAVAWLLKF
101: LAAKIVTASD ENRKPSEGGA PKISRKKAVH TLTTVLNHRS KEACVHDIDK LDSDNELAVV DYIDDIYKYY NVAQHECRPI DYIGSQPEIS LKMRAILTDW
201: LVEVAHKFEL MPESLYLTMY AIDRFLSLQA AVPRRELQLV GMAAMLIACK YEETWAPEVN DFISIADNAY SRHQILSMEK NMLNSMEWNL TVPTPYVFLV
301: RFAKAAGSDK ELEQMIFFFA EMALMNYGLV TARPSLVAAS AVYAARCTLK RSPIWTETLK HHTGLTGLTE AQLLEPARSL VKAHAAAPES KLKAVYRKYS
401: SEQYGRVALR PPAVAWLLKF
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.