Factsheet for Solyc10g078330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc01g100570.2.1
Solyc02g014310.2.1
Solyc03g025880.2.1
Solyc03g111380.2.1
Solyc04g081190.2.1
Solyc04g082840.2.1
Solyc05g053650.2.1
Solyc07g009140.2.1
Solyc07g054690.1.1
Solyc08g066330.1.1
Solyc08g067030.2.1
Solyc09g009140.2.1
Solyc09g091750.2.1
Solyc09g098110.2.1
Solyc10g074720.1.1
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	Solyc09g098110.2.1	AT1G05805.1	20706207
AT3G11520.1	Solyc01g100570.2.1	AT1G56110.1	20706207
AT3G11520.1	Solyc03g111380.2.1	AT3G61650.1	20706207
AT3G11520.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc04g081190.2.1	AT4G38900.1	20706207
AT3G11520.1	Solyc09g009140.2.1	AT5G06680.1	20706207
AT4G37490.1	Solyc04g082840.2.1	AT1G20930.1	20706207
AT4G37490.1	Solyc04g082840.2.1	AT1G76540.1	20706207
AT4G37490.1	Solyc08g066330.1.1	AT3G48750.1	12065421
AT4G37490.1	Solyc10g074720.1.1	AT3G54180.1	12065421
AT5G06150.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT5G06150.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT5G06150.1	Solyc04g082840.2.1	AT1G20930.1	20706207
AT5G06150.1	Solyc02g014310.2.1	AT1G48920.1	20706207
AT5G06150.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT5G06150.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT5G06150.1	Solyc10g074720.1.1	AT3G54180.1	20706207
AT5G06150.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT5G06150.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT5G06150.1	Solyc08g067030.2.1	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018480	Potato	nucleus	96.22	95.76
Solyc10g080950.1.1	Tomato	nucleus	74.7	68.4
VIT_08s0040g00930.t01	Wine grape	nucleus	66.9	62.47
VIT_13s0067g01420.t01	Wine grape	nucleus	65.72	60.17
KRG95055	Soybean	nucleus	64.3	59.78
KRH66720	Soybean	endoplasmic reticulum, vacuole	27.66	58.79
KRH66713	Soybean	nucleus	62.41	58.15
TraesCSU01G217300.1	Wheat	cytosol	29.55	57.87
KRH66715	Soybean	nucleus	52.72	56.89
Solyc01g009040.2.1	Tomato	nucleus	57.92	56.32
KRH66718	Soybean	plastid	48.7	55.23
Solyc06g073610.2.1	Tomato	nucleus	57.45	55.23
HORVU0Hr1G001680.1	Barley	nucleus	41.37	54.69
Zm00001d019469_P001	Maize	extracellular	18.44	54.55
GSMUA_AchrUn_...	Banana	nucleus	37.83	53.69
GSMUA_Achr7P21380_001	Banana	nucleus	57.92	53.61
CDY69551	Canola	nucleus	44.44	52.96
Bra002046.1-P	Field mustard	nucleus	48.7	52.42
AT4G37490.1	Thale cress	nucleus	52.72	52.1
GSMUA_Achr4P10090_001	Banana	nucleus	52.25	52.0
CDY62475	Canola	nucleus	43.03	51.85
HORVU1Hr1G068080.1	Barley	plastid	41.84	51.75
GSMUA_Achr8P23970_001	Banana	nucleus	53.19	51.72
KRG95056	Soybean	cytosol	47.04	51.42
GSMUA_Achr10P...	Banana	nucleus	54.85	51.21
Bra028741.1-P	Field mustard	nucleus	50.12	51.08
CDX69311	Canola	nucleus	50.35	50.84
AT3G11520.1	Thale cress	nucleus	49.65	50.72
Bra011769.1-P	Field mustard	nucleus	50.83	50.23
CDX75659	Canola	nucleus	50.83	50.23
KXG24389	Sorghum	nucleus	29.79	50.0
Bra005880.1-P	Field mustard	nucleus, plastid	48.7	49.76
GSMUA_Achr3P24980_001	Banana	nucleus	47.04	49.5
EES03772	Sorghum	nucleus, plastid	51.77	48.78
Zm00001d012560_P002	Maize	nucleus, plastid	51.54	48.55
CDX80988	Canola	plastid	48.94	48.36
CDY11354	Canola	plastid	49.41	48.27
AT5G06150.1	Thale cress	nucleus	50.59	48.09
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	45.86	46.19
TraesCS3D01G326600.1	Wheat	nucleus	49.17	45.71
TraesCS3B01G363200.3	Wheat	nucleus	49.65	45.55
HORVU3Hr1G078880.2	Barley	nucleus	48.7	45.47
TraesCS3A01G333000.2	Wheat	nucleus	49.17	45.22
TraesCS1D01G309300.1	Wheat	nucleus, plastid	46.57	45.18
Zm00001d043164_P002	Maize	nucleus	51.54	45.04
TraesCS3D01G195200.1	Wheat	plastid	43.97	45.04
TraesCS3A01G192100.1	Wheat	nucleus, plastid	43.97	44.93
Os01t0281200-01	Rice	nucleus	44.92	44.92
TraesCS1A01G309800.1	Wheat	nucleus	46.1	44.72
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	46.1	44.52
TraesCS1B01G320900.1	Wheat	nucleus, plastid	45.86	44.5
TraesCS1D01G309400.1	Wheat	nucleus	45.86	44.39
TraesCS1B01G321000.1	Wheat	nucleus	45.39	44.04
HORVU0Hr1G026010.1	Barley	nucleus, plastid	45.15	43.12
HORVU1Hr1G068160.2	Barley	nucleus, plastid	45.15	43.12
Zm00001d010656_P001	Maize	nucleus	43.97	41.7
EES18429	Sorghum	mitochondrion	44.21	40.65
Os05t0493500-00	Rice	nucleus	45.63	39.63
EES02793	Sorghum	nucleus	43.03	39.31
Zm00001d008221_P001	Maize	nucleus	43.26	38.2
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	29.55	37.99
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	35.22	37.63
HORVU3Hr1G040990.2	Barley	nucleus, plastid	42.32	36.38
Solyc02g061650.1.1	Tomato	nucleus	29.08	35.04
Solyc12g094600.1.1	Tomato	nucleus	34.75	34.59
Solyc03g032190.2.1	Tomato	nucleus	35.22	34.57
Solyc04g082430.2.1	Tomato	nucleus	31.91	34.35
Solyc02g082820.2.1	Tomato	nucleus	35.22	34.33
Zm00001d020033_P001	Maize	nucleus	42.55	33.09
Zm00001d020996_P001	Maize	nucleus	41.37	32.17
CDY14091	Canola	plastid	49.88	32.16
CDY04980	Canola	nucleus	49.88	29.39
AT1G34460.5	Thale cress	cytosol	34.52	29.32
Solyc04g078310.2.1	Tomato	nucleus	25.3	28.84
Solyc12g088530.1.1	Tomato	nucleus	24.11	28.81
Solyc12g088470.1.1	Tomato	nucleus	23.88	28.06
Solyc12g088500.1.1	Tomato	nucleus	23.17	27.68
Solyc12g088520.1.1	Tomato	nucleus	22.93	27.32
Solyc10g049360.1.1	Tomato	nucleus	23.64	26.45
Solyc06g065680.2.1	Tomato	nucleus, plastid	29.08	25.89
Solyc11g005090.1.1	Tomato	plastid	29.79	25.71
Solyc03g120440.1.1	Tomato	nucleus, plastid	25.53	23.58
Solyc07g066660.2.1	Tomato	nucleus	32.39	18.54

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016020	GO:GO:0016021
UniProt:K4D275	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF352	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc10g078330.1	EnsemblPlants:Solyc10g078330.1.1
TMHMM:TMhelix	UniParc:UPI000276A23E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:60153674..60156337

Molecular Weight (calculated)

47483.6 Da

IEP (calculated)

9.303

GRAVY (calculated)

-0.271

Length

423 amino acids

Sequence
(BLAST)

001: MASRNVLQHQ NKGEVLVPGV LKQKKNMVAE GRNRKALGDI GNLATGYGAE GKPLPQKSVA VNVKVANVAN GAQKVPVGRK PAQKKVTVKP KPEEIIEISP
101: DTREKLMEKK MLRKKQAAED ITKKKSTLTS TLTARSKAAC GLSKKPKEHI VDIDAADVNN ELAVLEYVED IYNFYKLAET ETRVHDYIDS QPEINEKMRA
201: ILIDWLIEVH HKFELNPETL YLTINIVDRY LTVETSSRRE LQLLGISAML IASKYEEIWA PEVNDFVCIA DKTYSHDQVL AMEKQILGKL EWYLTVPTPY
301: VFLVRFIKAS LPDSEMENMV YFLAELGLMN YATIIYCPSM IAASAVYAAR HTLNRTPFWN GTLKLHTGFS ESQVIECSRQ LVSYHSEAAN HKLKVIYKKY
401: SNSERGAVAL LPPAKSLLTA SSS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.