Factsheet for Solyc09g091750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

plastid: 20363867
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076219	Potato	endoplasmic reticulum	98.61	98.61
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	89.24	90.23
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	85.46	85.37
VIT_00s0215g00040.t01	Wine grape	extracellular	53.78	84.38
KRH41754	Soybean	nucleus	81.87	81.71
KRH60454	Soybean	endoplasmic reticulum	81.77	81.61
AT2G32730.1	Thale cress	cytosol	81.47	81.47
CDX79472	Canola	cytosol, plastid	79.98	80.38
CDY19162	Canola	extracellular	80.28	80.28
Bra021810.1-P	Field mustard	cytosol, plastid	80.18	80.18
Bra022899.1-P	Field mustard	cytosol, plastid	80.08	80.08
CDY12178	Canola	cytosol	79.08	80.04
CDX84724	Canola	cytosol, plastid	79.98	79.9
CDY23791	Canola	cytosol, plastid	80.08	79.76
Bra005560.1-P	Field mustard	plastid	79.98	79.66
AT1G04810.1	Thale cress	cytosol	79.18	79.42
CDY60623	Canola	endoplasmic reticulum, golgi	75.7	78.43
GSMUA_Achr1P10550_001	Banana	cytosol	77.29	76.76
KXG27072	Sorghum	plasma membrane	75.4	75.1
Zm00001d026265_P002	Maize	plasma membrane	75.2	73.87
Os08t0224700-01	Rice	plasma membrane	72.11	73.35
Zm00001d049357_P001	Maize	plasma membrane	72.01	73.18
Os04t0608500-01	Rice	plasma membrane	22.41	73.05
EES13543	Sorghum	endoplasmic reticulum	71.81	72.98
Zm00001d024342_P001	Maize	plasma membrane	72.01	72.96
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	68.73	72.18
Zm00001d002373_P006	Maize	cytosol, plasma membrane	72.31	72.02
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	67.03	71.52
VIT_00s0125g00350.t01	Wine grape	cytosol	13.15	71.35
VIT_00s0215g00050.t01	Wine grape	cytosol	21.31	71.33
TraesCS2A01G430100.2	Wheat	golgi	73.61	71.06
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	72.91	71.0
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	72.81	70.97
TraesCS1B01G363000.1	Wheat	cytosol	69.92	70.06
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	69.42	69.56
Solyc10g008180.1.1	Tomato	plastid	13.55	18.6
Solyc07g053650.2.1	Tomato	nucleus	14.64	17.88
Solyc10g008170.2.1	Tomato	cytosol	1.29	6.44

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0030234	GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790
InterPro:IPR011989	UniProt:K4CWK1	PFAM:PF01851	PFAM:PF13646	PIRSF:PIRSF015947	PANTHER:PTHR10943
PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc09g091750.2	EnsemblPlants:Solyc09g091750.2.1	TMHMM:TMhelix
UniParc:UPI000276B77E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:70970917..70979979

Molecular Weight (calculated)

108933.0 Da

IEP (calculated)

5.024

GRAVY (calculated)

-0.127

Length

1004 amino acids

Sequence
(BLAST)

0001: MVTATMVSSA GGLLAMLNES HPQLKLHALS NLNTFVDYFW PEISTSVPVI ESLYEDEEFD QRQLAALVAS KVFYHLGEHN VSLSYALGAG PLFDVAEDSD
0101: YVHTVLAKAL DEYASYKIKA AESSDEATKV DPRLEAIVER MLDKCIKDGK YQQAIGMAIE CRRLDKVAEA IVRSDNVDAT LAYCSNVSHN FVNRREYRSE
0201: VLRLLVEVYE KSPSPNYLSM CQWLMFLDKP EDVASILEKL LRSENKDDAL LAFQIAFDLV ENEHQAFLLR VRDRLSSPNL QPSDTVQSLP ADSDRAATED
0301: DEASEDVPLL EESRPLGGTL TAADPKEVIY AERLGKLKGI LSGETSIQLT LQFLYSHNKS DLLILKTIKQ SVEMRNSVCH SATIYANAIM HAGTTVDTFL
0401: RENLDWLSRA TNWAKFSATA GLGVIHSGHL QQGRSLMAPY LPQGGAGGGG SPYSEGGALY ALGLIHANHG EGIKQFLRES LRSTNVEVIQ HGACLGLGLA
0501: ALGTADEDIY DDIKNVLYTD SAVAGEAAGI GMGLLMVGTA SEKASEMLAY AHETQHEKII RGLALGIALT VYGREEEADT LIEQMTRDQD PILRYGGMYA
0601: LALAYRGTAN NKAIRRLLHF AVSDVSDDVR RTAVLALGFV MYSEPEQMPR IVSLLSKSYN PHVRYGAAMA VGISCAGTGM SEAISLLEPL TSDVVDFVRQ
0701: GALIAMAMVM VQISEASDSR VGAFRRQLEK IVLDKHEDTM SKMGAILASG ILDAGGRNVT IKLLSKTKHD KITAVVGLAV FSQFWYWYPL IYFVSLAFSP
0801: TALIGLNSDL KVPKFDFVSH AKPSLFEYPK PITVTTTTSA VKLPTAVLST SARAKARASK KEAEKASAEK GAGESSSGAT NLGKGGKSTD KDGDSMQVDA
0901: PAEKKNEPEP SFEILTNPAR VVPAQEKFIK FLEDSRYIPV KSSPSGFVLL RDLRPDEPEV LSLTDAPSST ASSTGGGSTG QPAPASAMAV DEEPQPPPAF
1001: EYTS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.