Factsheet for VIT_00s0215g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 3
plastid 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0608500-01	Rice	plasma membrane	36.88	76.62
VIT_00s0125g00380.t01	Wine grape	cytosol	4.69	71.43
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	95.62	60.9
Solyc09g091750.2.1	Tomato	plastid	84.38	53.78
PGSC0003DMT400040763	Potato	cytosol	83.44	53.78
PGSC0003DMT400076219	Potato	endoplasmic reticulum	84.22	53.69
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	82.66	53.27
GSMUA_Achr1P10550_001	Banana	cytosol	80.0	50.64
KXG27072	Sorghum	plasma membrane	78.75	50.0
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	72.81	49.52
Zm00001d026265_P002	Maize	plasma membrane	78.75	49.32
Zm00001d049357_P001	Maize	plasma membrane	75.47	48.89
Os08t0224700-01	Rice	plasma membrane	75.31	48.83
Zm00001d002373_P006	Maize	cytosol, plasma membrane	76.41	48.51
EES13543	Sorghum	endoplasmic reticulum	74.84	48.48
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	72.34	48.43
Zm00001d024342_P001	Maize	plasma membrane	74.69	48.23
TraesCS2A01G430100.2	Wheat	golgi	76.56	47.12
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	75.62	46.94
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	73.12	46.71
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	75.0	46.6
TraesCS1B01G363000.1	Wheat	cytosol	72.81	46.51
VIT_03s0038g02720.t01	Wine grape	cytosol	9.22	44.36
VIT_00s0125g00350.t01	Wine grape	cytosol	7.97	27.57
VIT_12s0028g03130.t01	Wine grape	cytosol	17.03	12.25
VIT_00s0125g00320.t01	Wine grape	mitochondrion, plasma membrane	1.25	8.51
VIT_00s0215g00050.t01	Wine grape	cytosol	0.78	1.67

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100260616	wikigene:100260616	MapMan:19.2.6.2.2.2	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB57278	ProteinID:CCB57278.1	ncoils:Coil	UniProt:F6HRH0	EMBL:FN596016	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0034515	GO:GO:0043161
InterPro:IPR011989	EntrezGene:LOC100260616	wikigene:LOC100260616	PFAM:PF01851	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10
InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	UniParc:UPI0002109138	ArrayExpress:VIT_00s0215g00040	EnsemblPlantsGene:VIT_00s0215g00040	EnsemblPlants:VIT_00s0215g00040.t01
RefSeq:XP_002265758	RefSeq:XP_002265758.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:13536489..13543310

Molecular Weight (calculated)

70158.0 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.194

Length

640 amino acids

Sequence
(BLAST)

001: MATKVSSAGG LLAMLNESHP MLKFHALSNL NAFVDYFWPE ISTSVPIIES LYEDEEFDQR QRQLAALLVS KVFYYLGELN DSLSYALGAG PLFDVSEDSD
101: YVHTLLAKAI DEYASLKSKA AESNNEALVD PRLEAIVERM LDKCIVDGRY QQAMGMAVEC RRLDKLEEAI SRSDNVHGTL SYCINISHSF VNRREYRHEV
201: LRRLVKVYQK LPSPDYLSIC QCLMFLDEPE GVASILEKLL RSENKDDALL AFQIAFDLVE NEHQAFLLNV RDRLSNPRSQ PSESVQPGNN DTDSTQNGNP
301: GASEDVEMAD GSHASNGSQH EMDPIEASYA ERLTKIKGVL SGETLIQLTL QFLYSHNKSD LLILKTIKQS VEMRNSVCHS ATIYANAIMH AGTTVDTFLR
401: ENLDWLSRAT NWAKFSATAG LGVIHRGHLQ QGRSLMAPYL PQSGAGGGGS PYSEGGALYA LGLIHANHGE GIKQFLRDSL RSSNVEVIQH GACLGLGLAA
501: LGTADEDVYD DIKNVLYTDS AVAGEAAGIS MGLLMVGTAS EKASEMLAYA HETQHEKIIR GLALGIALTV YGREEEADTL IEQMTRDQDP ILRYGGMYAL
601: ALAYQGTANN KAIRQLLHFA VSDVSDDVRG TAEFPVVGSG

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.