Factsheet for VIT_12s0028g03130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0125g00350.t01
VIT_00s0194g00270.t01
VIT_00s0194g00310.t01
VIT_01s0146g00300.t01
VIT_02s0012g02660.t01
VIT_02s0025g02010.t01
VIT_03s0017g00150.t01
VIT_06s0004g03190.t01
VIT_06s0004g08220.t01
VIT_07s0005g03000.t01
VIT_07s0005g05160.t01
VIT_07s0031g01970.t01
VIT_07s0151g00690.t01
VIT_08s0058g00020.t01
VIT_09s0002g00350.t01
VIT_09s0002g00980.t01
VIT_09s0002g05800.t01
VIT_09s0018g01930.t01
VIT_10s0042g00070.t01
VIT_10s0092g00280.t01
VIT_11s0016g00230.t01
VIT_12s0028g03130.t01
VIT_12s0034g00940.t01
VIT_12s0035g00780.t01
VIT_12s0057g00240.t01
VIT_12s0057g00690.t01
VIT_14s0006g03040.t01
VIT_15s0045g00310.t01
VIT_15s0048g00130.t01
VIT_15s0048g00900.t01
VIT_17s0000g10250.t01
VIT_18s0001g01120.t01
VIT_18s0001g10820.t01
VIT_18s0001g12760.t01
VIT_18s0001g13090.t01
VIT_18s0089g00420.t01
VIT_19s0014g04520.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20580.1	VIT_00s0125g00350.t01	AT1G04810.1	20706207
AT2G20580.1	VIT_18s0001g01120.t01	AT1G20200.1	20706207
AT2G20580.1	VIT_12s0034g00940.t01	AT1G29150.1	20706207
AT2G20580.1	VIT_15s0048g00130.t01	AT1G29150.1	20706207
AT2G20580.1	VIT_18s0001g13090.t01	AT1G45000.1	20706207
AT2G20580.1	VIT_09s0018g01930.t01	AT1G51650.1	20706207
AT2G20580.1	VIT_10s0092g00280.t01	AT1G51650.1	20706207
AT2G20580.1	VIT_18s0089g00420.t01	AT1G51650.1	20706207
AT2G20580.1	VIT_19s0014g04520.t01	AT1G51650.1	20706207
AT2G20580.1	VIT_11s0016g00230.t01	AT1G53750.1	20706207
AT2G20580.1	VIT_02s0025g02010.t01	AT1G64520.1	20706207
AT2G20580.1	VIT_07s0005g05160.t01	AT2G20140.1	20706207
AT2G20580.1	VIT_00s0125g00350.t01	AT2G32730.1	20706207
AT2G20580.1	VIT_14s0006g03040.t01	AT3G02540.1	21798944
AT2G20580.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT2G20580.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT2G20580.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT2G20580.1	VIT_00s0194g00270.t01	AT4G16390.1	20706207
AT2G20580.1	VIT_00s0194g00310.t01	AT4G16390.1	20706207
AT2G20580.1	VIT_17s0000g10250.t01	AT4G24820.1	20706207
AT2G20580.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT2G20580.1	VIT_03s0017g00150.t01	AT5G05780.1	20706207
AT2G20580.1	VIT_07s0005g03000.t01	AT5G05780.1	20706207
AT2G20580.1	VIT_09s0002g05800.t01	AT5G20000.1	20706207
AT2G20580.1	VIT_18s0001g10820.t01	AT5G23540.1	20706207
AT2G20580.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946
AT2G20580.1	VIT_02s0012g02660.t01	AT5G45620.1	20706207
AT2G20580.1	VIT_06s0004g08220.t01	AT5G58290.1	20706207
AT4G28470.1	VIT_00s0125g00350.t01	AT1G04810.1	14623884
AT4G28470.1	VIT_18s0001g01120.t01	AT1G20200.1	14623884
AT4G28470.1	VIT_12s0034g00940.t01	AT1G29150.1	14623884
AT4G28470.1	VIT_15s0048g00130.t01	AT1G29150.1	14623884
AT4G28470.1	VIT_18s0001g13090.t01	AT1G45000.1	14623884
AT4G28470.1	VIT_11s0016g00230.t01	AT1G53750.1	14623884
AT4G28470.1	VIT_09s0002g00350.t01	AT1G53850.1	14623884
AT4G28470.1	VIT_06s0004g03190.t01	AT1G56450.1	14623884
AT4G28470.1	VIT_02s0025g02010.t01	AT1G64520.1	14623884
AT4G28470.1	VIT_18s0001g01120.t01	AT1G75990.1	14623884
AT4G28470.1	VIT_09s0002g00980.t01	AT2G05840.1	14623884
AT4G28470.1	VIT_12s0028g03130.t01	AT2G20580.1	14623884
AT4G28470.1	VIT_00s0125g00350.t01	AT2G32730.1	14623884
AT4G28470.1	VIT_09s0002g00350.t01	AT3G14290.1	14623884
AT4G28470.1	VIT_10s0042g00070.t01	AT3G22110.1	14623884
AT4G28470.1	VIT_07s0151g00690.t01	AT3G22630.1	14623884
AT4G28470.1	VIT_01s0146g00300.t01	AT3G60820.1	14623884
AT4G28470.1	VIT_15s0048g00900.t01	AT3G60820.1	14623884
AT4G28470.1	VIT_17s0000g10250.t01	AT4G24820.1	14623884
AT4G28470.1	VIT_12s0028g03130.t01	AT4G28470.1	14623884
AT4G28470.1	VIT_07s0005g05160.t01	AT4G29040.1	14623884
AT4G28470.1	VIT_03s0017g00150.t01	AT5G05780.1	14623884
AT4G28470.1	VIT_07s0005g03000.t01	AT5G05780.1	14623884
AT4G28470.1	VIT_09s0002g05800.t01	AT5G19990.1	14623884
AT4G28470.1	VIT_09s0002g05800.t01	AT5G20000.1	14623884
AT4G28470.1	VIT_18s0001g10820.t01	AT5G23540.1	14623884
AT4G28470.1	VIT_09s0002g00980.t01	AT5G35590.1	14623884
AT4G28470.1	VIT_18s0001g12760.t01	AT5G42790.1	14623884
AT4G28470.1	VIT_02s0012g02660.t01	AT5G45620.1	14623884
AT4G28470.1	VIT_06s0004g08220.t01	AT5G58290.1	14623884
AT4G28470.1	VIT_07s0031g01970.t01	AT5G64760.1	14623884
AT4G28470.1	VIT_08s0058g00020.t01	AT5G64760.1	14623884
AT4G28470.1	VIT_12s0035g00780.t01	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053650.2.1	Tomato	nucleus	82.47	89.29
KRH55899	Soybean	endoplasmic reticulum, nucleus	87.3	87.8
PGSC0003DMT400024306	Potato	cytosol	88.31	87.72
KRH25643	Soybean	endoplasmic reticulum, nucleus	87.19	87.68
AT2G20580.1	Thale cress	cytosol	85.28	85.19
CDY05774	Canola	cytosol	84.27	83.71
Bra024200.1-P	Field mustard	cytosol	83.48	83.39
CDY29907	Canola	extracellular	83.37	83.28
CDX92875	Canola	extracellular	83.03	82.94
Bra011030.1-P	Field mustard	cytosol	82.81	82.72
CDY35187	Canola	cytosol, extracellular	82.7	82.51
CDY38389	Canola	cytosol, extracellular	82.7	82.51
AT4G28470.1	Thale cress	cytosol	82.13	82.04
CDY31952	Canola	plasma membrane	78.54	81.66
GSMUA_Achr11P...	Banana	cytosol	80.9	81.08
Bra036488.1-P	Field mustard	cytosol, extracellular, plasma membrane	75.17	80.31
Os02t0146700-02	Rice	plasma membrane	78.31	77.62
TraesCS6D01G105500.1	Wheat	golgi	77.87	77.43
TraesCS6A01G116500.1	Wheat	golgi, unclear	77.87	77.43
HORVU6Hr1G021020.1	Barley	cytosol	77.87	77.17
Zm00001d053881_P001	Maize	mitochondrion, plastid	77.19	77.02
EES04513	Sorghum	cytosol	77.19	76.85
Zm00001d015259_P001	Maize	cytosol	76.63	76.63
TraesCS6B01G144500.1	Wheat	cytosol	77.75	76.55
Os09t0326800-01	Rice	plasma membrane	75.84	75.76
Os06t0699900-01	Rice	plasma membrane	76.4	75.47
Bra010366.1-P	Field mustard	cytosol	74.94	75.28
CDY14239	Canola	cytosol, extracellular	74.94	75.11
CDX97442	Canola	cytosol	74.04	74.63
Solyc10g008180.1.1	Tomato	plastid	60.22	73.32
TraesCS7B01G322000.1	Wheat	cytosol	60.9	61.59
TraesCS7D01G413900.1	Wheat	mitochondrion	57.3	61.37
TraesCS7A01G421600.1	Wheat	mitochondrion	55.84	60.83
TraesCS7A01G421700.1	Wheat	cytosol	60.0	60.68
TraesCS7B01G321900.1	Wheat	cytosol	58.88	60.44
TraesCS7D01G413800.1	Wheat	cytosol	39.44	56.61
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	31.57	47.95
VIT_00s0125g00380.t01	Wine grape	cytosol	1.24	26.19
VIT_00s0125g00350.t01	Wine grape	cytosol	3.82	18.38
VIT_00s0125g00320.t01	Wine grape	mitochondrion, plasma membrane	1.91	18.09
VIT_03s0038g02720.t01	Wine grape	cytosol	2.58	17.29
VIT_00s0215g00040.t01	Wine grape	extracellular	12.25	17.03
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	2.7	16.55
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	17.3	15.32
VIT_00s0215g00050.t01	Wine grape	cytosol	3.15	9.33

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100255701	wikigene:100255701	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CBI21899	ProteinID:CBI21899.3	UniProt:E0CTI4	EMBL:FN595235	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0030234	GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790	InterPro:IPR011989
EntrezGene:LOC100255701	wikigene:LOC100255701	PIRSF:PIRSF015965	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	SUPFAM:SSF48371
TIGR:TC59002	UniParc:UPI00019843B5	ArrayExpress:VIT_12s0028g03130	EnsemblPlantsGene:VIT_12s0028g03130	EnsemblPlants:VIT_12s0028g03130.t01	unigene:Vvi.916
RefSeq:XP_002277029	RefSeq:XP_002277029.1	SEG:seg	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 2 homolog [Source:UniProtKB/TrEMBL;Acc:E0CTI4]

Coordinates

chr12:+:3898346..3918332

Molecular Weight (calculated)

97508.5 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.038

Length

890 amino acids

Sequence
(BLAST)

001: MAPDPNSTSS GPREEASVKV PSKDPKKKDE KKDEDLSDED LALKQQLELY VERVQDSDPG LQKMALESMR QEIRTATSSM TSVPKPLKFL RPHYGALKSF
101: YETMGDSDLK KYLADILSVL ALTMSAEGEL ESLKYRLLGS EGDIGSWGHE YVRNLAGEIS QEYAKRQSEE APIDDLMELV QQIVAFHMKH NAEPEAVDLL
201: MEVEDLDLLV EHVDKTNHKR TCLYLTSSAR YLPGPDDILV LDIAYVIYLK FEEYPNALQI AVFLDNMQYV KQIFTSCDDL LQKKQFCYIL ARHGVAFELD
301: DEMVVDNDER EALQDIINNS KLSEGYLTLA RDIEVMEPKS PEDIYKAHLL DGRASAGASV DSARQNLAAT FVNAFVNAGF GQDKLMTVAS EASSGGSSGN
401: WLFKNKEHGK ASAAASLGMI LLWDVDSGLA QIDKYFHSND NHVIAGALLG VGIVNCGIKN DCDPALALLA DYIGKEDPSI RIGAILGLGL AYAGCQNDQI
501: RCKLTPILND AKAPLDVIAF TAISLGFVYV GSCNEEIAQA IIFALMDRSD SELGEPLTRL LPLGLGLLYL GKQESVEATA EVSKTFNEKI RKYCDMTLLS
601: CAYAGTGNVL KVQHLLGQCA QHLEKGETHQ GPAVLGIAMV AMAEELGLEM AIRSLEHLLQ YGEQNIRRAV PLALGLLCIS NPKVNVMDTL SRLSHDTDTE
701: VAMAAVISLG LIGAGTNNAR IAGMLRNLSS YYYKEASLLF CVRIAQGLVH LGKGLLTLAP YHSDRFLLSP SALAGIVTLL HACLDMKAII LGKYHYVLYV
801: LVLAMQPRML MTVDEDLKPL SVPVRVGQAV DVVGQAGRPK TITGFQTHST PVLLAAGDRA ELATEKYIPV SPILEGFVIL KENPDYREDH

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.