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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra003428.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra007565.1-P
Bra009693.1-P
Bra010342.1-P
Bra010366.1-P
Bra010849.1-P
Bra011030.1-P
Bra011079.1-P
Bra013157.1-P
Bra013838.1-P
Bra014468.1-P
Bra015170.1-P
Bra015799.1-P
Bra017408.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023815.1-P
Bra023851.1-P
Bra024165.1-P
Bra024200.1-P
Bra025066.1-P
Bra026492.1-P
Bra027456.1-P
Bra027705.1-P
Bra027934.1-P
Bra029375.1-P
Bra030921.1-P
Bra030922.1-P
Bra031328.1-P
Bra032291.1-P
Bra032422.1-P
Bra035332.1-P
Bra036488.1-P
Bra038162.1-P
Bra038919.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040831.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28470.1 Bra010849.1-P AT1G29150.1 14623884
AT4G28470.1 Bra032291.1-P AT1G29150.1 14623884
AT4G28470.1 Bra030922.1-P AT1G53750.1 14623884
AT4G28470.1 Bra039688.1-P AT1G53750.1 14623884
AT4G28470.1 Bra040569.1-P AT1G53750.1 14623884
AT4G28470.1 Bra030921.1-P AT1G53850.1 14623884
AT4G28470.1 Bra027934.1-P AT1G56450.1 14623884
AT4G28470.1 Bra038162.1-P AT1G56450.1 14623884
AT4G28470.1 Bra038919.1-P AT1G56450.1 14623884
AT4G28470.1 Bra027705.1-P AT1G64520.1 14623884
AT4G28470.1 Bra040915.1-P AT1G64520.1 14623884
AT4G28470.1 Bra015799.1-P AT1G75990.1 14623884
AT4G28470.1 Bra013157.1-P AT2G05840.1 14623884
AT4G28470.1 Bra015170.1-P AT2G05840.1 14623884
AT4G28470.1 Bra036488.1-P AT2G20580.1 14623884
AT4G28470.1 Bra005560.1-P AT2G32730.1 14623884
AT4G28470.1 Bra021810.1-P AT2G32730.1 14623884
AT4G28470.1 Bra022899.1-P AT2G32730.1 14623884
AT4G28470.1 Bra001152.1-P AT3G05530.1 14623884
AT4G28470.1 Bra039431.1-P AT3G05530.1 14623884
AT4G28470.1 Bra040214.1-P AT3G05530.1 14623884
AT4G28470.1 Bra023851.1-P AT3G22110.1 14623884
AT4G28470.1 Bra031328.1-P AT3G22110.1 14623884
AT4G28470.1 Bra023815.1-P AT3G22630.1 14623884
AT4G28470.1 Bra040831.1-P AT3G22630.1 14623884
AT4G28470.1 Bra003428.1-P AT3G60820.1 14623884
AT4G28470.1 Bra007565.1-P AT3G60820.1 14623884
AT4G28470.1 Bra014468.1-P AT3G60820.1 14623884
AT4G28470.1 Bra013838.1-P AT4G24820.1 14623884
AT4G28470.1 Bra010366.1-P AT4G28470.1 14623884
AT4G28470.1 Bra011030.1-P AT4G28470.1 14623884
AT4G28470.1 Bra024200.1-P AT4G28470.1 14623884
AT4G28470.1 Bra010342.1-P AT4G29040.1 14623884
AT4G28470.1 Bra011079.1-P AT4G29040.1 14623884
AT4G28470.1 Bra024165.1-P AT4G29040.1 14623884
AT4G28470.1 Bra006369.1-P AT5G05780.1 14623884
AT4G28470.1 Bra017408.1-P AT5G05780.1 14623884
AT4G28470.1 Bra032422.1-P AT5G05780.1 14623884
AT4G28470.1 Bra002279.1-P AT5G19990.1 14623884
AT4G28470.1 Bra006529.1-P AT5G19990.1 14623884
AT4G28470.1 Bra006530.1-P AT5G19990.1 14623884
AT4G28470.1 Bra020079.1-P AT5G19990.1 14623884
AT4G28470.1 Bra002279.1-P AT5G20000.1 14623884
AT4G28470.1 Bra006529.1-P AT5G20000.1 14623884
AT4G28470.1 Bra006530.1-P AT5G20000.1 14623884
AT4G28470.1 Bra020079.1-P AT5G20000.1 14623884
AT4G28470.1 Bra009693.1-P AT5G23540.1 14623884
AT4G28470.1 Bra026492.1-P AT5G23540.1 14623884
AT4G28470.1 Bra029375.1-P AT5G23540.1 14623884
AT4G28470.1 Bra027456.1-P AT5G42790.1 14623884
AT4G28470.1 Bra035332.1-P AT5G42790.1 14623884
AT4G28470.1 Bra025066.1-P AT5G45620.1 14623884
AT4G28470.1 Bra002662.1-P AT5G58290.1 14623884
AT4G28470.1 Bra006775.1-P AT5G58290.1 14623884
AT4G28470.1 Bra020378.1-P AT5G58290.1 14623884
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14239 Canola cytosol, extracellular 98.65 98.42
Bra024200.1-P Field mustard cytosol 84.65 84.18
Bra011030.1-P Field mustard cytosol 84.54 84.06
AT4G28470.1 Thale cress cytosol 82.84 82.38
Bra036488.1-P Field mustard cytosol, extracellular, plasma membrane 73.25 77.91
Solyc07g053650.2.1 Tomato nucleus 70.09 75.55
VIT_12s0028g03130.t01 Wine grape cytosol 75.28 74.94
PGSC0003DMT400024306 Potato cytosol 74.72 73.88
GSMUA_Achr11P... Banana cytosol 68.4 68.24
TraesCS6D01G105500.1 Wheat golgi 68.4 67.71
TraesCS6A01G116500.1 Wheat golgi, unclear 68.4 67.71
Os02t0146700-02 Rice plasma membrane 68.51 67.59
HORVU6Hr1G021020.1 Barley cytosol 68.4 67.48
Zm00001d053881_P001 Maize mitochondrion, plastid 67.38 66.93
TraesCS6B01G144500.1 Wheat cytosol 68.28 66.92
Zm00001d015259_P001 Maize cytosol 67.16 66.85
EES04513 Sorghum cytosol 67.27 66.67
Os06t0699900-01 Rice plasma membrane 67.72 66.59
Os09t0326800-01 Rice plasma membrane 66.93 66.55
Solyc10g008180.1.1 Tomato plastid 53.84 65.25
KRH57774 Soybean endoplasmic reticulum, plasma membrane 19.75 59.93
TraesCS7A01G421600.1 Wheat mitochondrion 53.5 58.02
TraesCS7B01G322000.1 Wheat cytosol 57.45 57.84
TraesCS7B01G321900.1 Wheat cytosol 56.55 57.79
TraesCS7D01G413900.1 Wheat mitochondrion 54.06 57.64
TraesCS7A01G421700.1 Wheat cytosol 56.66 57.05
TraesCS7D01G413800.1 Wheat cytosol 36.23 51.77
HORVU7Hr1G097500.16 Barley endoplasmic reticulum, golgi, plasma membrane 29.01 43.86
GSMUA_Achr1P10580_001 Banana cytosol, nucleus, plasma membrane 2.71 16.55
Bra003811.1-P Field mustard endoplasmic reticulum 4.06 14.63
Bra005560.1-P Field mustard plastid 15.91 13.99
Bra021810.1-P Field mustard cytosol, plastid 15.8 13.94
Bra016824.1-P Field mustard plastid, vacuole 5.42 13.91
Bra022899.1-P Field mustard cytosol, plastid 15.69 13.84
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.6.2.2.1InterPro:26S_Psome_Rpn1InterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlantsGene:Bra010366
EnsemblPlants:Bra010366.1EnsemblPlants:Bra010366.1-PGO:GO:0000502GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0008540GO:GO:0009056
GO:GO:0019538GO:GO:0030163GO:GO:0030234GO:GO:0042176GO:GO:0050790InterPro:IPR011989
UniProt:M4D1L6PFAM:PF01851PIRSF:PIRSF015965PANTHER:PTHR10943PANTHER:PTHR10943:SF8InterPro:Proteasome/cyclosome_rpt
SUPFAM:SSF48371UniParc:UPI0002545496SEG:seg:::
Description
AT4G28470 (E=0.0) RPN1B, ATRPN1B | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B); binding / enzyme regulator
Coordinates
chrA08:+:14145643..14150513
Molecular Weight (calculated)
97252.8 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.091
Length
886 amino acids
Sequence
(BLAST)
001: MAPAPDPNSS VGGGGGAKRD QASTKVKAPK KKEEDLSEED LELKQNLELY VKRVQDPNPE LQKTALESMS QEIRASTSSM TSVPMPLKFL RPHYGTLKDC
101: HQKMAESDLK KLLADILSVL ALTMSAEGER ESLGYRLAGS GGDIGSWGHE YVRNLAGEVA VEYTIRQVQE SSMMDLMDLV RQIVAFHMKH NAETEAVDLL
201: MEVEDLDPLL DHVGRTNFRR TCNYLTSAAK YRPWPDDMVA LDIAYMIYMK FKAYPNALQI ALLLDNMQYV KKVFTSCTNL LRKKQFCYMI SRHGITFNLD
301: PEMVEDKDDR SMLQEIVNNI KLNEGYLTLA RDIDVMEAKR PEDIYKAHLL NVRSGPVVES AKQNLAATFV NAFVNAGFGQ DKLMAGTSDS TSGSAGNWIF
401: RNKDDGKTSA TASLGMIYLW DVEGGLAQLD KYYDISDKPV RAGALLGVGI VNCGIKSDCD PALALIGEYT DNEDSSVRIG AIMGIGIAYA GSQNDQIKSS
501: LSPILNDEKA PLDVVAFAAL SLGMVYVGSC NDEVAQSIMF ALMDRNSAEP GEALVRFLPL GLGLLYLGKQ ESVEATAEIS KTLCEKIRNY CKMTLLSCAY
601: AGTGNVLKVQ ELLAQCGEHP EKDTIHQGPA VLGVAMIAMS EELGRDMAIR SLEHVLQYGE QNIRRAVPLA LGLLCISNPK MNVMDTLSRL SHDTDSEVAM
701: TATISLGLIG AGTNNARIAG MLRNLSSYNE QHARLLFCVR IAQGLLHMGK GLLTLNPFHS DRVLLSPTAL AGIVTLLHAC LDMKSIILGK YHYVLYFLAL
801: AMQPRMMLTV DENLKPISVP VRVGQAVDVV GQAGRPRTIT GFQTYETPVL LAAGERAELA TDKYIPLSPI LEGFVILREN PNYREE
Best Arabidopsis Sequence Match ( AT4G28470.1 )
(BLAST)
001: MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
Arabidopsis Description
RPN1B26S proteasome non-ATPase regulatory subunit 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q6XJG8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.