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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra003428.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra007565.1-P
Bra009693.1-P
Bra010342.1-P
Bra010366.1-P
Bra010849.1-P
Bra011030.1-P
Bra011079.1-P
Bra013157.1-P
Bra013838.1-P
Bra014468.1-P
Bra015170.1-P
Bra015799.1-P
Bra017408.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023815.1-P
Bra023851.1-P
Bra024165.1-P
Bra024200.1-P
Bra025066.1-P
Bra026492.1-P
Bra027456.1-P
Bra027705.1-P
Bra027934.1-P
Bra029375.1-P
Bra030921.1-P
Bra030922.1-P
Bra031328.1-P
Bra032291.1-P
Bra032422.1-P
Bra035332.1-P
Bra036488.1-P
Bra038162.1-P
Bra038919.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040831.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28470.1 Bra010849.1-P AT1G29150.1 14623884
AT4G28470.1 Bra032291.1-P AT1G29150.1 14623884
AT4G28470.1 Bra030922.1-P AT1G53750.1 14623884
AT4G28470.1 Bra039688.1-P AT1G53750.1 14623884
AT4G28470.1 Bra040569.1-P AT1G53750.1 14623884
AT4G28470.1 Bra030921.1-P AT1G53850.1 14623884
AT4G28470.1 Bra027934.1-P AT1G56450.1 14623884
AT4G28470.1 Bra038162.1-P AT1G56450.1 14623884
AT4G28470.1 Bra038919.1-P AT1G56450.1 14623884
AT4G28470.1 Bra027705.1-P AT1G64520.1 14623884
AT4G28470.1 Bra040915.1-P AT1G64520.1 14623884
AT4G28470.1 Bra015799.1-P AT1G75990.1 14623884
AT4G28470.1 Bra013157.1-P AT2G05840.1 14623884
AT4G28470.1 Bra015170.1-P AT2G05840.1 14623884
AT4G28470.1 Bra036488.1-P AT2G20580.1 14623884
AT4G28470.1 Bra005560.1-P AT2G32730.1 14623884
AT4G28470.1 Bra021810.1-P AT2G32730.1 14623884
AT4G28470.1 Bra022899.1-P AT2G32730.1 14623884
AT4G28470.1 Bra001152.1-P AT3G05530.1 14623884
AT4G28470.1 Bra039431.1-P AT3G05530.1 14623884
AT4G28470.1 Bra040214.1-P AT3G05530.1 14623884
AT4G28470.1 Bra023851.1-P AT3G22110.1 14623884
AT4G28470.1 Bra031328.1-P AT3G22110.1 14623884
AT4G28470.1 Bra023815.1-P AT3G22630.1 14623884
AT4G28470.1 Bra040831.1-P AT3G22630.1 14623884
AT4G28470.1 Bra003428.1-P AT3G60820.1 14623884
AT4G28470.1 Bra007565.1-P AT3G60820.1 14623884
AT4G28470.1 Bra014468.1-P AT3G60820.1 14623884
AT4G28470.1 Bra013838.1-P AT4G24820.1 14623884
AT4G28470.1 Bra010366.1-P AT4G28470.1 14623884
AT4G28470.1 Bra011030.1-P AT4G28470.1 14623884
AT4G28470.1 Bra024200.1-P AT4G28470.1 14623884
AT4G28470.1 Bra010342.1-P AT4G29040.1 14623884
AT4G28470.1 Bra011079.1-P AT4G29040.1 14623884
AT4G28470.1 Bra024165.1-P AT4G29040.1 14623884
AT4G28470.1 Bra006369.1-P AT5G05780.1 14623884
AT4G28470.1 Bra017408.1-P AT5G05780.1 14623884
AT4G28470.1 Bra032422.1-P AT5G05780.1 14623884
AT4G28470.1 Bra002279.1-P AT5G19990.1 14623884
AT4G28470.1 Bra006529.1-P AT5G19990.1 14623884
AT4G28470.1 Bra006530.1-P AT5G19990.1 14623884
AT4G28470.1 Bra020079.1-P AT5G19990.1 14623884
AT4G28470.1 Bra002279.1-P AT5G20000.1 14623884
AT4G28470.1 Bra006529.1-P AT5G20000.1 14623884
AT4G28470.1 Bra006530.1-P AT5G20000.1 14623884
AT4G28470.1 Bra020079.1-P AT5G20000.1 14623884
AT4G28470.1 Bra009693.1-P AT5G23540.1 14623884
AT4G28470.1 Bra026492.1-P AT5G23540.1 14623884
AT4G28470.1 Bra029375.1-P AT5G23540.1 14623884
AT4G28470.1 Bra027456.1-P AT5G42790.1 14623884
AT4G28470.1 Bra035332.1-P AT5G42790.1 14623884
AT4G28470.1 Bra025066.1-P AT5G45620.1 14623884
AT4G28470.1 Bra002662.1-P AT5G58290.1 14623884
AT4G28470.1 Bra006775.1-P AT5G58290.1 14623884
AT4G28470.1 Bra020378.1-P AT5G58290.1 14623884
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35187 Canola cytosol, extracellular 99.89 99.78
Bra024200.1-P Field mustard cytosol 94.5 94.5
AT4G28470.1 Thale cress cytosol 90.91 90.91
Bra036488.1-P Field mustard cytosol, extracellular, plasma membrane 80.47 86.07
Bra010366.1-P Field mustard cytosol 84.06 84.54
Solyc07g053650.2.1 Tomato nucleus 77.1 83.58
VIT_12s0028g03130.t01 Wine grape cytosol 82.72 82.81
PGSC0003DMT400024306 Potato cytosol 82.72 82.25
GSMUA_Achr11P... Banana cytosol 74.19 74.44
TraesCS6D01G105500.1 Wheat golgi 74.41 74.08
TraesCS6A01G116500.1 Wheat golgi, unclear 74.41 74.08
HORVU6Hr1G021020.1 Barley cytosol 74.3 73.72
Os02t0146700-02 Rice plasma membrane 73.96 73.39
TraesCS6B01G144500.1 Wheat cytosol 74.3 73.23
Zm00001d053881_P001 Maize mitochondrion, plastid 73.06 72.98
EES04513 Sorghum cytosol 73.06 72.82
Zm00001d015259_P001 Maize cytosol 72.73 72.81
Os09t0326800-01 Rice plasma membrane 70.71 70.71
Os06t0699900-01 Rice plasma membrane 71.16 70.37
Solyc10g008180.1.1 Tomato plastid 56.45 68.81
KRH57774 Soybean endoplasmic reticulum, plasma membrane 20.88 63.7
TraesCS7B01G322000.1 Wheat cytosol 58.92 59.66
TraesCS7A01G421600.1 Wheat mitochondrion 54.66 59.61
TraesCS7B01G321900.1 Wheat cytosol 57.8 59.4
TraesCS7D01G413900.1 Wheat mitochondrion 54.88 58.84
TraesCS7A01G421700.1 Wheat cytosol 57.8 58.52
TraesCS7D01G413800.1 Wheat cytosol 37.93 54.52
HORVU7Hr1G097500.16 Barley endoplasmic reticulum, golgi, plasma membrane 30.19 45.9
GSMUA_Achr1P10580_001 Banana cytosol, nucleus, plasma membrane 2.81 17.24
Bra003811.1-P Field mustard endoplasmic reticulum 4.38 15.85
Bra016824.1-P Field mustard plastid, vacuole 5.95 15.36
Bra005560.1-P Field mustard plastid 16.39 14.48
Bra022899.1-P Field mustard cytosol, plastid 16.16 14.34
Bra021810.1-P Field mustard cytosol, plastid 16.16 14.34
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.6.2.2.1InterPro:26S_Psome_Rpn1InterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlantsGene:Bra011030
EnsemblPlants:Bra011030.1EnsemblPlants:Bra011030.1-PGO:GO:0000502GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0008540GO:GO:0009056
GO:GO:0019538GO:GO:0030163GO:GO:0030234GO:GO:0042176GO:GO:0050790InterPro:IPR011989
UniProt:M4D3H6PFAM:PF01851PIRSF:PIRSF015965PANTHER:PTHR10943PANTHER:PTHR10943:SF8InterPro:Proteasome/cyclosome_rpt
SUPFAM:SSF48371UniParc:UPI0002545ADDSEG:seg:::
Description
AT2G20580 (E=0.0) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator
Coordinates
chrA01:+:4341748..4346975
Molecular Weight (calculated)
97579.7 Da
IEP (calculated)
4.807
GRAVY (calculated)
-0.065
Length
891 amino acids
Sequence
(BLAST)
001: MAPVPDPNNV GGGAKRDEAT TKVPSKDPKK KDDKKEDDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KELHKNMADS DLKKLLADIL SVLALTMSAE GERESLGYRL TGSGGDIGSW GHEYVRNLAG EIAEEYTMRQ SEEASVEDLM DLVKQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLAHVDRTN FRRTCNYLTS SAKFLPGPDD MLVLDIAYMI YMKFEEYPNA LQVALFLDNM QYVKQVFTSC SDLLRKKQFC YMISRHGITV
301: ELDSEMVADK DDRDMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDAASGTA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTQLDKYFHS TDNPVLAGAL LGVGINNCGI KSDCDPALAL LGEYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QLRSSLSPIL NDAKAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAQLGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGIA MVAMSEELGL DMAIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVNVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL SPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFIVLAMQPR MMLTVDENLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.