Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 98.78 | 99.78 |
| TraesCS6D01G105500.1 | Wheat | golgi | 98.67 | 99.66 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 98.12 | 98.78 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 91.15 | 92.38 |
| Os02t0146700-02 | Rice | plasma membrane | 91.7 | 92.32 |
| EES04513 | Sorghum | cytosol | 91.26 | 92.28 |
| Zm00001d015259_P001 | Maize | cytosol | 90.27 | 91.69 |
| GSMUA_Achr11P... | Banana | cytosol | 80.53 | 81.98 |
| Solyc07g053650.2.1 | Tomato | nucleus | 72.01 | 79.2 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 76.55 | 77.75 |
| PGSC0003DMT400024306 | Potato | cytosol | 76.44 | 77.12 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 74.78 | 76.38 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 74.45 | 76.05 |
| CDY38389 | Canola | cytosol, extracellular | 73.67 | 74.66 |
| AT2G20580.1 | Thale cress | cytosol | 73.56 | 74.64 |
| CDY35187 | Canola | cytosol, extracellular | 73.34 | 74.33 |
| Bra011030.1-P | Field mustard | cytosol | 73.23 | 74.3 |
| Bra024200.1-P | Field mustard | cytosol | 73.01 | 74.07 |
| CDY29907 | Canola | extracellular | 72.9 | 73.96 |
| CDX92875 | Canola | extracellular | 72.9 | 73.96 |
| CDY05774 | Canola | cytosol | 73.23 | 73.88 |
| AT4G28470.1 | Thale cress | cytosol | 72.01 | 73.06 |
| CDY31952 | Canola | plasma membrane | 67.92 | 71.73 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 65.38 | 70.95 |
| CDX97442 | Canola | cytosol | 66.7 | 68.29 |
| Bra010366.1-P | Field mustard | cytosol | 66.92 | 68.28 |
| CDY14239 | Canola | cytosol, extracellular | 66.81 | 68.02 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 65.71 | 67.5 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 63.94 | 66.67 |
| Solyc10g008180.1.1 | Tomato | plastid | 53.76 | 66.48 |
| AT4G08140.1 | Thale cress | cytosol | 5.97 | 64.29 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.24 | 62.67 |
| PGSC0003DMT400056260 | Potato | cytosol | 11.95 | 60.0 |
| Solyc10g008170.2.1 | Tomato | cytosol | 12.83 | 57.43 |
| KRH57675 | Soybean | cytosol | 18.58 | 55.45 |
| CDY72396 | Canola | cytosol | 8.52 | 53.47 |
| CDX99107 | Canola | cytosol | 11.5 | 40.15 |
| KRH30269 | Soybean | cytosol | 8.52 | 37.56 |
| CDY33144 | Canola | extracellular | 12.28 | 35.46 |
| CDY65736 | Canola | extracellular | 13.38 | 29.8 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.32 | 20.69 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.54 | 16.67 |
| TraesCS1B01G363000.1 | Wheat | cytosol | 15.15 | 13.67 |
| TraesCS2B01G450800.2 | Wheat | cytosol, endoplasmic reticulum | 15.04 | 13.2 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | InterPro:IPR011989 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 |
| EnsemblPlantsGene:TraesCS6B01G144500 | EnsemblPlants:TraesCS6B01G144500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6B:+:143994139..144001084
Molecular Weight (calculated)
98867.2 Da
IEP (calculated)
4.822
GRAVY (calculated)
-0.022
Length
904 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPENPNGG AAAAAPSEPA PPAKPSSSKG KKKDDKKDDD LSEEDLALKE QLELYVVRAQ DVDPGVQRLA LESMRQEIRS ATSSMTSVPK PLKFLRPHYG
101: TLKSYYETMP ESELKKYMAD ILSVLALTMS AEGERESLRY RLLGSEGDIG SWGHEYVRNL AGEIAQEFQK RQGDDMPIDE LMELVQQIVS FHMKHNAEPE
201: AVDLLMEVED LDLLVEHVDS TNYKRTCLYL TSSSRFLSSP DDTLALDIAY TIYMKFEDLA SALRIALLLD NKSIQYVKQV YTATDDLVLK KQFSYIIARH
301: GLAMEIDDEI AADENDKEML QEIVNNTKLS EGYLTLARDI EVMEAKSPED IYKVHLIDGR GASSSLDSAR QNLAATFVNA FVNAGFGQDK LMTAPSDSSS
401: SGSSGNWLFK NKEHGKASAA ASLGMILLWD TDSGLAQLDK YLHSTDTHVV AGALLGIGVV TCGVKNDCDP ALAILMEYVN KDDSNIRIGA ILGLGIAYAG
501: SQKDELRVQL SAILGDPQAT LEVLVFTAVA LGLVFVGSCN EEIAQSIIFF LMERSEAELA EPIIRLLPVV LGLLYLGKQI AYFGELFQES VEATAEVSKT
601: FDEKIRKYCD VTLMSLAYAG TGNVLKVQKL LGICSQHLEK GETHQGPAVL GIALIAMSEE LGAEMAVRSL ERLLQYGEQN IRRAVPLALG ILCISNPKVN
701: VMDTLSRLSH DADADVSMAA IISLGLIGAG TNNARIAGML RNLSSYYYKE AAHLFCVRIA QGLVHLGKGL LTLSPYHSDR FLLSPMALGG IVTVLHACLD
801: MKSTILGKYH YILYIIVLAM QPRMLLTVDE DLKPLPVPVR VGQAVDVVGQ AGRPKTITGF QTHTTPVLLA AGERAELATD KYIPLTSTLE GFVILKKNPE
901: YHEE
101: TLKSYYETMP ESELKKYMAD ILSVLALTMS AEGERESLRY RLLGSEGDIG SWGHEYVRNL AGEIAQEFQK RQGDDMPIDE LMELVQQIVS FHMKHNAEPE
201: AVDLLMEVED LDLLVEHVDS TNYKRTCLYL TSSSRFLSSP DDTLALDIAY TIYMKFEDLA SALRIALLLD NKSIQYVKQV YTATDDLVLK KQFSYIIARH
301: GLAMEIDDEI AADENDKEML QEIVNNTKLS EGYLTLARDI EVMEAKSPED IYKVHLIDGR GASSSLDSAR QNLAATFVNA FVNAGFGQDK LMTAPSDSSS
401: SGSSGNWLFK NKEHGKASAA ASLGMILLWD TDSGLAQLDK YLHSTDTHVV AGALLGIGVV TCGVKNDCDP ALAILMEYVN KDDSNIRIGA ILGLGIAYAG
501: SQKDELRVQL SAILGDPQAT LEVLVFTAVA LGLVFVGSCN EEIAQSIIFF LMERSEAELA EPIIRLLPVV LGLLYLGKQI AYFGELFQES VEATAEVSKT
601: FDEKIRKYCD VTLMSLAYAG TGNVLKVQKL LGICSQHLEK GETHQGPAVL GIALIAMSEE LGAEMAVRSL ERLLQYGEQN IRRAVPLALG ILCISNPKVN
701: VMDTLSRLSH DADADVSMAA IISLGLIGAG TNNARIAGML RNLSSYYYKE AAHLFCVRIA QGLVHLGKGL LTLSPYHSDR FLLSPMALGG IVTVLHACLD
801: MKSTILGKYH YILYIIVLAM QPRMLLTVDE DLKPLPVPVR VGQAVDVVGQ AGRPKTITGF QTHTTPVLLA AGERAELATD KYIPLTSTLE GFVILKKNPE
901: YHEE
1: MVQDPNPDLQ KAALESMRQE IRALTSSMTS VPKPLKFLRP QYVTLKAFHE TMADSNLKKY ISDILSVLAL TTLYRLHYFL ITRR
Arabidopsis Description
26S proteasome non-ATPase regulatory subunit-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SYE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.