Factsheet for TraesCS4D01G265700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G369300.2
TraesCS3B01G401200.2
TraesCS3D01G362300.2
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	TraesCS3A01G369300.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS3B01G401200.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS3D01G362300.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6A01G251200.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6B01G274100.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6D01G233000.5	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G044600.1	Wheat	golgi	98.98	98.57
TraesCS4B01G265800.1	Wheat	plastid	98.16	98.16
TraesCS4B01G265700.1	Wheat	plastid	97.95	97.95
HORVU4Hr1G071480.8	Barley	plastid	97.13	95.76
Os08t0550100-01	Rice	plasma membrane	90.37	90.74
EES14113	Sorghum	cytosol, nucleus, plastid	91.39	89.92
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	90.78	87.2
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	88.32	86.9
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	90.37	84.48
HORVU7Hr1G080070.2	Barley	cytosol	16.19	82.29
KRH61001	Soybean	nucleus	80.33	80.49
KRH51666	Soybean	nucleus	79.71	79.88
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	79.71	79.71
VIT_18s0001g01120.t01	Wine grape	nucleus	79.51	79.67
VIT_03s0038g02590.t01	Wine grape	plastid	78.48	78.64
PGSC0003DMT400015774	Potato	nucleus	78.89	77.94
KRH17475	Soybean	nucleus	77.05	76.73
AT1G20200.1	Thale cress	cytosol	76.02	76.02
AT1G75990.1	Thale cress	cytosol	75.41	75.56
KRH05990	Soybean	cytosol, nucleus, plastid	75.0	74.69
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.37	72.69
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.51	70.55
GSMUA_Achr8P13090_001	Banana	cytosol	33.61	67.77
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	61.68	61.93
CDY01387	Canola	cytosol	19.47	44.39
Bra012219.1-P	Field mustard	cytosol	19.47	44.39
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	9.84	31.37

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS4D01G265700	EnsemblPlants:TraesCS4D01G265700.1	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:435651618..435655205

Molecular Weight (calculated)

54955.1 Da

IEP (calculated)

8.339

GRAVY (calculated)

-0.257

Length

488 amino acids

Sequence
(BLAST)

001: MDVQMGEPQA APPPAAAAAA PAPSTIQHLK EIAAVIEAGS VTKEVRRISR AVRLTVALRR RLAARDVSAF LAFALPANSD AYARLTPLLP KEDEAEMDID
101: AAAPATQISI KHGLPEIEIY CSLLVLIFLI DQKKYDEAKA CATGSIARLK NLNRRTVDVL ASRLYFYYSY VYELTNTLAE IRGNLLGLHR MATLHHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PAAARGFRIQ CNKWAIIVRL LLGEIPERTV
301: FMQKGMKEAL APYFELTNAV RIGDLELFRA VADKFASTFS ADRTHNLIVR LRHNVIRTGL RNISISYSRI SLADIAKKLR LDTENPVADA ECIVAKAIRD
401: GAIDATIDHA NGWMVSKETG DVYSTNEPQA AFNSRIAFCL NMHNEAVKAM RFPPNSHKEK ESAEKRRERL QQEEELAKHM AEEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.