Factsheet for Zm00001d032010_P007

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014640_P035
Zm00001d036507_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT1G75990.1	Zm00001d036507_P003	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14113	Sorghum	cytosol, nucleus, plastid	91.57	96.37
Os08t0550100-01	Rice	plasma membrane	87.36	93.83
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	90.61	93.11
TraesCS4B01G265800.1	Wheat	plastid	84.87	90.78
TraesCS4B01G265700.1	Wheat	plastid	84.67	90.57
HORVU4Hr1G071480.8	Barley	plastid	85.82	90.51
TraesCS4D01G265700.1	Wheat	unclear	84.48	90.37
TraesCS4A01G044600.1	Wheat	golgi	84.29	89.8
KRH61001	Soybean	nucleus	75.48	80.9
KRH51666	Soybean	nucleus	74.9	80.29
VIT_18s0001g01120.t01	Wine grape	nucleus	74.71	80.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	74.52	79.71
VIT_03s0038g02590.t01	Wine grape	plastid	72.61	77.82
KRH17475	Soybean	nucleus	72.99	77.76
PGSC0003DMT400015774	Potato	nucleus	73.56	77.73
AT1G20200.1	Thale cress	cytosol	71.07	76.02
KRH05990	Soybean	cytosol, nucleus, plastid	70.88	75.51
AT1G75990.1	Thale cress	cytosol	70.11	75.15
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	38.51	74.17
HORVU7Hr1G080070.2	Barley	cytosol	13.6	73.96
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.33	70.55
GSMUA_Achr8P13090_001	Banana	cytosol	30.84	66.53
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	58.43	62.76
CDY01387	Canola	cytosol	18.01	43.93
Bra012219.1-P	Field mustard	cytosol	18.01	43.93
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	9.58	32.68

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	UniProt:A0A1D6KMZ9	ncoils:Coil	GO:GO:0000502
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717
ProteinID:ONM04207.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758
PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000843032E	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d032010	EnsemblPlants:Zm00001d032010_P007	EnsemblPlants:Zm00001d032010_T007	SEG:seg	:	:

Description

26S proteasome non-ATPase regulatory subunit 3 homolog A

Coordinates

chr1:+:209338223..209341591

Molecular Weight (calculated)

59131.2 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.235

Length

522 amino acids

Sequence
(BLAST)

001: MPEDVQMNDS EPQSAAPAPA AAAAPALSTL HRKLPHSFLP LSQTLEFSIY HLCVAEAALM SDLKEIASVI EAGSLSKEVR RISRAFRLTV ALRRRLAARD
101: VSAFLAFALP ASSEAYGRLI ALVPKEDDTE MDVDAVAPAT QISIKHGLPE IEIYCYLLAL IFLIDQKKYD EAKVCASVSI ARLKNLNRRT VDVLASRLYF
201: YYSYVYELTN SLAEIRGNLL ALHRMATLHR DELGQETLLN LLLRNYLHYN LYDQAEKLRS KAPRFEAHSN QQFCRYLFYL GKIRTIQLEY TDAKESLLQA
301: ARKAPTTARG FRIQCNKWAI IVRLLLGEIP ERTVFMQKGM KKALTPYFEL TNAVRVGDLE LFRTVADKFA STFSADRTRN LIVRLRHNVI RTGLRNISIS
401: YSRISLADIA KKLRLDSENP VADAESIVAK AIRDGAIDAT IDHANGWMVS KETGDVYSTN EPQIAFNSRI AFCLNMHNEA VKAMRFPPNS HKEKESAEKR
501: RERLQQEEEL AKHMAEEEDD DF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.