Factsheet for Bra012219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01387	Canola	cytosol	100.0	100.0
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	31.78	25.09
Os09t0541900-01	Rice	cytosol, nucleus, plastid	45.79	20.12
Os08t0550100-01	Rice	plasma membrane	45.33	19.96
Bra015799.1-P	Field mustard	plastid	43.93	19.5
TraesCS4D01G265700.1	Wheat	unclear	44.39	19.47
TraesCS4B01G265700.1	Wheat	plastid	44.39	19.47
TraesCS4A01G044600.1	Wheat	golgi	44.39	19.39
TraesCS4B01G265800.1	Wheat	plastid	43.93	19.26
HORVU4Hr1G071480.8	Barley	plastid	43.93	18.99
EES14113	Sorghum	cytosol, nucleus, plastid	43.93	18.95
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	43.46	18.75
TraesCS5A01G335200.1	Wheat	golgi	43.46	18.75
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	42.99	18.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	42.06	18.44
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	43.46	18.31
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	43.93	18.01
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	42.06	16.36
GSMUA_Achr8P13090_001	Banana	cytosol	7.01	6.2
HORVU7Hr1G080070.2	Barley	cytosol	1.87	4.17
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	2.8	3.92

Protein Annotations

MapMan:16.3.3.6	InterPro:26S_Psome_reg_C	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	EnsemblPlantsGene:Bra012219	EnsemblPlants:Bra012219.1
EnsemblPlants:Bra012219.1-P	GO:GO:0000502	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0019538
GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717	InterPro:IPR036882	UniProt:M4D6V9
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PANTHER:PTHR13516	PANTHER:PTHR13516:SF10	SUPFAM:SSF82704
UniParc:UPI00025415FC	SEG:seg	:	:	:	:

Description

AT1G76010 (E=1e-035) | nucleic acid binding

Coordinates

chrA07:+:9231839..9236702

Molecular Weight (calculated)

24169.3 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.343

Length

214 amino acids

Sequence
(BLAST)

001: MEKAINKSVT IAELIKRRIP GIHQHTSIGS IDITDIWESK EEGLLPIETT RHVLVITITL SKKELNTSAV GYQCPIPIEL GKPFVEIDYE GRGIFLPCIT
101: LQHYAMMSWV SSANPVADAE SIVPKAIRDG AMDATIDHKN GCMVSNETGD IYSTNEPQTE LNSRIAFCLN MHNKAVRALR CPPNTRKEKE SDEKRRKSWL
201: SIWLRKTMMT FREG

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.