Factsheet for GSMUA_Achr11P01140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01610_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P13090_001	Banana	cytosol	43.24	87.19
KRH61001	Soybean	nucleus	84.22	84.39
KRH51666	Soybean	nucleus	84.22	84.39
VIT_03s0038g02590.t01	Wine grape	plastid	84.02	84.19
PGSC0003DMT400015774	Potato	nucleus	82.99	81.98
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	91.8	81.45
VIT_18s0001g01120.t01	Wine grape	nucleus	80.94	81.11
KRH17475	Soybean	nucleus	80.74	80.41
TraesCS4B01G265800.1	Wheat	plastid	79.92	79.92
Os08t0550100-01	Rice	plasma membrane	79.51	79.84
TraesCS4B01G265700.1	Wheat	plastid	79.71	79.71
TraesCS4D01G265700.1	Wheat	unclear	79.71	79.71
Os09t0541900-01	Rice	cytosol, nucleus, plastid	79.51	79.67
TraesCS4A01G044600.1	Wheat	golgi	79.51	79.18
HORVU4Hr1G071480.8	Barley	plastid	80.12	78.99
AT1G20200.1	Thale cress	cytosol	78.48	78.48
EES14113	Sorghum	cytosol, nucleus, plastid	79.71	78.43
AT1G75990.1	Thale cress	cytosol	78.07	78.23
KRH05990	Soybean	cytosol, nucleus, plastid	77.87	77.55
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	43.03	77.49
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	78.69	77.42
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	78.28	77.02
TraesCS5A01G335200.1	Wheat	golgi	78.07	76.81
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	79.51	76.38
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	79.71	74.52
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	63.73	63.99
HORVU7Hr1G080070.2	Barley	cytosol	10.04	51.04
CDY01387	Canola	cytosol	18.44	42.06
Bra012219.1-P	Field mustard	cytosol	18.44	42.06
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	10.04	32.03

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr11G01140_001	EnsemblPlants:GSMUA_Achr11P01140_001
EnsemblPlants:GSMUA_Achr11T01140_001	InterPro:IPR000717	UniProt:M0RNE5	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0002966506	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

Probable 26S proteasome non-ATPase regulatory subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G01140_001]

Coordinates

chr11:-:768819..773089

Molecular Weight (calculated)

55515.0 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.275

Length

488 amino acids

Sequence
(BLAST)

001: MTADVEMKEV QALSNSVSSA AVPSTLQHLK EIASLIETGA QAKEVRRIVR AVRLTMMLRR KLRASVISAF LGHVLTPGSE VLAKLSSYLP KPDEHEMDVD
101: TAASAVQGPA KHSIPELEIY CYLLVLIFLI DQKRYDEAKV CSSASIARLR NVNRRAVDVI AARLYFYYSF TYELTNNLAE IRGTLLALHR MATLRRDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PVAARGFRIQ CNKWAVIVRL LLGEIPERTV
301: FMQKGMKKAL TPYFELTNAV RIGDLELFRI VADKFSGTFN SDRTHNLIVR LRHNVIRTGL RNISISYSRI SLADVARKLR LDSENPVADA ESIVAKAIRD
401: GAVDAIIDHA NGWMVSKETG NVYSTNEPQI AFNSRIAFCL NMHNEAVRAL RFPPNSNKEK ESEEKRRERQ QQEQELAKHI AEEDDGDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.