Factsheet for PGSC0003DMT400015775

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 3
extracellular 4
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400062932
PGSC0003DMT400069698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	PGSC0003DMT400062932	AT5G45010.1	19843313
AT1G20200.1	PGSC0003DMT400069698	AT5G45010.1	19843313
AT1G75990.1	PGSC0003DMT400062932	AT5G45010.1	19843313
AT1G75990.1	PGSC0003DMT400069698	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	94.03	94.42
CDY31902	Canola	cytosol	11.93	80.56
PGSC0003DMT400015774	Potato	nucleus	68.11	67.0
CDX83743	Canola	cytosol	5.35	66.67
KRH61001	Soybean	nucleus	65.64	65.5
KRH51666	Soybean	nucleus	65.43	65.3
VIT_18s0001g01120.t01	Wine grape	nucleus	65.23	65.09
KRH17475	Soybean	nucleus	64.81	64.29
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	63.99	63.73
AT1G20200.1	Thale cress	cytosol	63.79	63.52
KRH05990	Soybean	cytosol, nucleus, plastid	63.99	63.47
CDX87648	Canola	extracellular	62.35	62.86
Bra015799.1-P	Field mustard	plastid	62.14	62.66
Os09t0541900-01	Rice	cytosol, nucleus, plastid	62.76	62.63
Os08t0550100-01	Rice	plasma membrane	62.35	62.35
CDY54330	Canola	cytosol, nucleus, plastid	45.27	62.32
CDX73215	Canola	cytosol, nucleus, plastid	62.76	62.12
TraesCS4B01G265800.1	Wheat	plastid	61.93	61.68
TraesCS4D01G265700.1	Wheat	unclear	61.93	61.68
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	34.36	61.62
AT1G75990.1	Thale cress	cytosol	61.73	61.6
TraesCS4B01G265700.1	Wheat	plastid	61.73	61.48
EES14113	Sorghum	cytosol, nucleus, plastid	62.55	61.29
TraesCS4A01G044600.1	Wheat	golgi	61.73	61.22
TraesCS5A01G335200.1	Wheat	golgi	62.14	60.89
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	61.93	60.69
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	61.93	60.69
HORVU4Hr1G071480.8	Barley	plastid	61.52	60.4
GSMUA_Achr8P13090_001	Banana	cytosol	29.84	59.92
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	62.55	59.84
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	62.76	58.43
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.43	57.82
CDY00383	Canola	extracellular	12.76	53.91
CDX78831	Canola	extracellular	10.7	50.0
CDY31901	Canola	cytosol	24.28	47.01
CDX83742	Canola	cytosol	5.14	43.86
CDY22923	Canola	extracellular	17.08	37.9
HORVU7Hr1G080070.2	Barley	cytosol	7.2	36.46
CDY54331	Canola	cytosol	6.17	35.29
CDY47438	Canola	plastid	15.64	26.3

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717
UniProt:M1A6K2	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	EnsemblPlantsGene:PGSC0003DMG402006167	PGSC:PGSC0003DMG402006167
EnsemblPlants:PGSC0003DMT400015775	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	TMHMM:TMhelix	UniParc:UPI0002952437	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

26S proteasome regulatory subunit S3 [Source:PGSC_GENE;Acc:PGSC0003DMG402006167]

Coordinates

chr1:-:87655461..87658447

Molecular Weight (calculated)

55330.8 Da

IEP (calculated)

9.327

GRAVY (calculated)

-0.108

Length

486 amino acids

Sequence
(BLAST)

001: MAFLVVIVSV FYIAMVVVWV SQVFFKMDDQ EVKVQHQSPP SVYDCSVDPS VLQDLKEVAS LIEGGAYTSE VQKIYRAMRL TMKLRSKLKA SVLSAFLNYV
101: LTSGSEVHTR LSSYLPQDRH DSQVHVETPA TESKHLLPEL EMFCYLLVLI FLIDQKKYNK AKACSSESVV RLKSKNSITA DVLASRLYFY YSLSFELAGD
201: LAEIRGNLLA LYRSATIHHN KFSQETLLNL LLRNYLHYNL YDQAEKFRSK AHHFEALSNQ QFCRYLFYQG KIKTIQLEYT DAKDCLLQAA QKGPTIAVGF
301: KIQCNKWAVI VHLLLGEIPE RTIFTQKRME KALRPYFELT NAFRVGDVEL FRTVAEKFSS TFSQDRTSNL INRVRHNVIR TGIKNISVSY TRISLADIAK
401: KLNLDFENTV GDAENIVAKA IRDGAIDATL DHANGWLVSK ATGDVYSTNE PQIAFDSRIN FCLNRHNEAL RALRFPRGLI NKGVAT

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.