Factsheet for Zm00001d053232_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014640_P035
Zm00001d036507_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT1G75990.1	Zm00001d036507_P003	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14113	Sorghum	cytosol, nucleus, plastid	93.9	96.17
Os08t0550100-01	Rice	plasma membrane	90.16	94.24
TraesCS4B01G265800.1	Wheat	plastid	87.6	91.19
TraesCS4B01G265700.1	Wheat	plastid	87.6	91.19
TraesCS4D01G265700.1	Wheat	unclear	87.2	90.78
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	93.11	90.61
HORVU4Hr1G071480.8	Barley	plastid	87.8	90.1
TraesCS4A01G044600.1	Wheat	golgi	86.81	90.0
KRH61001	Soybean	nucleus	77.76	81.11
KRH51666	Soybean	nucleus	77.17	80.49
VIT_18s0001g01120.t01	Wine grape	nucleus	76.38	79.67
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	76.38	79.51
VIT_03s0038g02590.t01	Wine grape	plastid	75.59	78.85
PGSC0003DMT400015774	Potato	nucleus	76.57	78.74
KRH17475	Soybean	nucleus	75.2	77.96
AT1G20200.1	Thale cress	cytosol	73.23	76.23
HORVU7Hr1G080070.2	Barley	cytosol	14.37	76.04
KRH05990	Soybean	cytosol, nucleus, plastid	72.83	75.51
AT1G75990.1	Thale cress	cytosol	72.05	75.15
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	38.78	72.69
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.98	70.18
GSMUA_Achr8P13090_001	Banana	cytosol	32.48	68.18
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	59.84	62.55
CDY01387	Canola	cytosol	18.31	43.46
Bra012219.1-P	Field mustard	cytosol	18.31	43.46
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	10.24	33.99

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	UniProt:A0A1D6QMX7	ProteinID:AQK58995.1	ncoils:Coil
GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790
InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758
PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000844EEBA	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d053232	EnsemblPlants:Zm00001d053232_P005	EnsemblPlants:Zm00001d053232_T005	SEG:seg	:	:

Description

26S proteasome non-ATPase regulatory subunit 3 homolog A

Coordinates

chr4:-:221137227..221144081

Molecular Weight (calculated)

57549.4 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.212

Length

508 amino acids

Sequence
(BLAST)

001: MTEDVQMNDS EPQPAASAPA VGAPALSTLH HLKEIASVIE AGSLSKEVRR ISRAFRLTVA LRRRLAARDV SAFLAFALPA SSEAYGRLTA LVPKVKFTFP
101: PLLLAIATRR LEDDTEMDVD AAAPATQISI KHGLPEIEIY CYLLVLIFLI DHKKYDEAKA CASVSIARLK NLNRRTVDVL ASRLYFYYSY VYELTNSLAE
201: IRGNLLALHR MATLHRDELG QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PITACGFRIQ
301: CNKWAIIVRL LLGEIPERTV FMQKGMKKAL IPYFELTNAV RVGDLELFRA VADKFASTFS ADRTRNLIVR LRHNVIRTGL RNISISYSRI SLADIAKKLR
401: LDSENPIADA ESIVAKAIRD GAIDATIDHA NGWMVSKETG DVYSTNEPQI AFNSRIAFCL NMHNEAVKAM RFPPNSHKEK ESAEKRRERL QQEEELAKHM
501: AEDDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.