CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04963
KRH16129
KRH30315
KRH54417
KRH63506
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	KRH04963	AT5G45010.1	19843313
AT1G20200.1	KRH16129	AT5G45010.1	19843313
AT1G20200.1	KRH54417	AT5G45010.1	19843313
AT1G20200.1	KRH63506	AT5G45010.1	19843313
AT1G75990.1	KRH30315	AT2G44950.1	21798944
AT1G75990.1	KRH75261	AT2G44950.1	21798944
AT1G75990.1	KRH04963	AT5G45010.1	19843313
AT1G75990.1	KRH16129	AT5G45010.1	19843313
AT1G75990.1	KRH54417	AT5G45010.1	19843313
AT1G75990.1	KRH63506	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61001	Soybean	nucleus	97.95	97.95
KRH17475	Soybean	nucleus	89.32	88.78
VIT_18s0001g01120.t01	Wine grape	nucleus	86.65	86.65
CDY31902	Canola	cytosol	12.73	86.11
KRH05990	Soybean	cytosol, nucleus, plastid	86.45	85.92
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	84.39	84.22
AT1G20200.1	Thale cress	cytosol	83.37	83.2
AT1G75990.1	Thale cress	cytosol	82.55	82.55
CDX83743	Canola	cytosol	6.57	82.05
Bra015799.1-P	Field mustard	plastid	80.9	81.74
CDX87648	Canola	extracellular	80.7	81.54
CDX73215	Canola	cytosol, nucleus, plastid	81.72	81.06
TraesCS4B01G265800.1	Wheat	plastid	80.29	80.12
Os08t0550100-01	Rice	plasma membrane	79.88	80.04
TraesCS4B01G265700.1	Wheat	plastid	80.08	79.92
TraesCS4D01G265700.1	Wheat	unclear	79.88	79.71
Os09t0541900-01	Rice	cytosol, nucleus, plastid	79.67	79.67
TraesCS4A01G044600.1	Wheat	golgi	79.88	79.39
HORVU4Hr1G071480.8	Barley	plastid	80.49	79.19
EES14113	Sorghum	cytosol, nucleus, plastid	80.08	78.63
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	78.64	77.22
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	80.49	77.17
TraesCS5A01G335200.1	Wheat	golgi	78.44	77.02
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	78.23	76.81
CDY54330	Canola	cytosol, nucleus, plastid	55.03	75.92
GSMUA_Achr8P13090_001	Banana	cytosol	37.58	75.62
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	80.29	74.9
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	83.37	73.82
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.45	72.69
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	65.3	65.43
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	64.89	65.29
CDY00383	Canola	extracellular	14.58	61.74
CDY31901	Canola	cytosol	31.42	60.96
CDX83742	Canola	cytosol	6.57	56.14
CDX78831	Canola	extracellular	11.09	51.92
HORVU7Hr1G080070.2	Barley	cytosol	9.86	50.0
CDY54331	Canola	cytosol	7.8	44.71
CDY22923	Canola	extracellular	19.71	43.84
CDY47438	Canola	plastid	18.69	31.49

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100814379	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	EMBL:ACUP02003383	ncoils:Coil
EnsemblPlantsGene:GLYMA_06G021600	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	UniProt:I1K7H0	InterPro:IPR000717
EnsemblPlants:KRH51666	ProteinID:KRH51666	ProteinID:KRH51666.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI000233A8EF	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:1629728..1633127

Molecular Weight (calculated)

55587.7 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.349

Length

487 amino acids

Sequence
(BLAST)

001: MTQDLEMKDR STPSNSVSSP APSTLQHLKE IASLIETGSY SKEVRRIARA VRLTIALRRK LTASAISSFL DHVLTPGSEV HAKLSAYLPK DDDHEMEVDA
101: ATSAIQTPAK HLLPELEIYC YLLVLLFLID QKKYSEAKAC SSASIVWLKN INRRTVDVIA SRLYFYYSYS YELMGDLAEI RGNLLALHRI ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VAARGFRIQC NKWAVIVRLL LGEIPERTVF
301: MQKGMEKALR PYFELTNAVR IGDLELFRNI ADKFATTFNA DRTHNLIVRL RHNVIRTGLR NISISYSRIS LADVAKKLRL NSASPVADAE SIVSKAIRDG
401: AIDATLDHAN GWMVSKETGD IYSTNEPQLA FNSRIAFCLN MHNEAVRALR FPPNTHKEKE SAEKRRERQQ QEQELAKHIA EEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.