CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83742	Canola	cytosol	30.59	45.61
CDY01387	Canola	cytosol	41.18	16.36
CDX87648	Canola	extracellular	45.88	8.09
CDX73215	Canola	cytosol, nucleus, plastid	45.88	7.94
KRH61001	Soybean	nucleus	44.71	7.8
KRH51666	Soybean	nucleus	44.71	7.8
KRH17475	Soybean	nucleus	44.71	7.76
VIT_18s0001g01120.t01	Wine grape	nucleus	42.35	7.39
KRH05990	Soybean	cytosol, nucleus, plastid	40.0	6.94
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	35.29	6.17
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	34.12	5.99
CDY22923	Canola	extracellular	3.53	1.37
CDY54330	Canola	cytosol, nucleus, plastid	1.18	0.28
CDY31902	Canola	cytosol	0.0	0.0
CDY47438	Canola	plastid	0.0	0.0
CDY31901	Canola	cytosol	0.0	0.0
CDY00383	Canola	extracellular	0.0	0.0
CDX83743	Canola	cytosol	0.0	0.0
CDX78831	Canola	extracellular	0.0	0.0

Protein Annotations

InterPro:26S_Psome_reg_C	MapMan:35.2	GO:A0A078IWF1	UniProt:A0A078IWF1	EnsemblPlants:CDY54331	ProteinID:CDY54331
ProteinID:CDY54331.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176
GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00013893001	PFAM:PF08375	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	UniParc:UPI0004EDF0F8
SEG:seg	:	:	:	:	:

Description

BnaCnng26770DBnaCnng26770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWF1]

Coordinates

chrLK033305:+:18706..19006

Molecular Weight (calculated)

9873.0 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.393

Length

85 amino acids

Sequence
(BLAST)

1: MVSKETGDIY STNEPQTAFN SRIAFCLNMH NEARAMRRGE RGSSKRKSWL SIWLRKTMMI SRERSSVRTL FLAAHNLTFL LCPSF

Best Arabidopsis Sequence Match ( AT1G75990.1 )
(BLAST)

001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF

Arabidopsis Description

RPN3B26S proteasome non-ATPase regulatory subunit 3 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.