CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDY07438
CDY18962
CDY27400
CDY37020
CDY39298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	CDX74700	AT2G44950.1	21798944
AT1G75990.1	CDY18962	AT2G44950.1	21798944
AT1G75990.1	CDY27400	AT2G44950.1	21798944
AT1G75990.1	CDY37020	AT2G44950.1	21798944
AT1G75990.1	CDY07438	AT5G45010.1	19843313
AT1G75990.1	CDY39298	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015799.1-P	Field mustard	plastid	99.79	99.79
CDX73215	Canola	cytosol, nucleus, plastid	97.72	95.93
CDY31902	Canola	cytosol	13.69	91.67
AT1G75990.1	Thale cress	cytosol	90.87	89.94
CDX83743	Canola	cytosol	7.26	89.74
CDY54330	Canola	cytosol, nucleus, plastid	59.54	81.3
KRH61001	Soybean	nucleus	81.74	80.9
KRH51666	Soybean	nucleus	81.54	80.7
VIT_18s0001g01120.t01	Wine grape	nucleus	79.88	79.06
KRH17475	Soybean	nucleus	79.88	78.57
KRH05990	Soybean	cytosol, nucleus, plastid	78.01	76.73
CDY00383	Canola	extracellular	16.39	68.7
CDY31901	Canola	cytosol	33.2	63.74
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	62.66	62.4
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	62.86	62.35
CDX78831	Canola	extracellular	12.66	58.65
CDX83742	Canola	cytosol	6.64	56.14
CDY22923	Canola	extracellular	21.78	47.95
CDY54331	Canola	cytosol	8.09	45.88
CDY01387	Canola	cytosol	19.5	43.93
CDY47438	Canola	plastid	20.95	34.95

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	GO:A0A078DK74	EnsemblPlants:CDX87648	ProteinID:CDX87648
ProteinID:CDX87648.1	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0019538	GO:GO:0030234
GO:GO:0042176	EnsemblPlantsGene:GSBRNA2T00146654001	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0004EDE015	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaA07g32250D

Coordinates

chrLK031850:+:1627649..1630141

Molecular Weight (calculated)

54877.6 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.368

Length

482 amino acids

Sequence
(BLAST)

001: MKDNNQTPAQ SIVSATTSTL QHLKEIAALI DTGSYTKEVR RVARAVRLTV GIRQKLTASV VASFLDFALG SGSEAHARLS SFVPKSDEHD MEVDTASSTS
101: LAASKHVPVE LEIYCYFIVL LFLIDQKKYN EAKACSSASI ARLKSLNKRT IDVIASRLYF YYSLSYEMTG DLAEIRGTLL SLHHSATLRH DELGQETLLN
201: LLLRNYLHYN LYDQAEKLRS KAPRFEAHSN QQFCRYLFYL GKIRTIQLEY TDAKESLLQA ARKAPVAALG FRVQCNKWAI LVRLLLGEIP ERSIFMQKGM
301: EKALRPYFEL TNAVRIGDLE LFRNVQEKFS KTFSEDRTHN LIVRLRHNVI RTGLRNISIS YSRISLTDVA QKLRLNSANP VADAESIVAK AIRDGAIDAT
401: IDHKNGYMVS KETGDIYSTN EPQNAFNSRI AFCLNMHNEA VRALRFPPNT HREKESEEKR REMKQQEEEL AKYMAEEDDD DF

Best Arabidopsis Sequence Match ( AT1G75990.1 )
(BLAST)

001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF

Arabidopsis Description

RPN3B26S proteasome non-ATPase regulatory subunit 3 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.