CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00383	Canola	extracellular	85.58	77.39
CDY22923	Canola	extracellular	86.54	41.1
CDY47438	Canola	plastid	56.73	20.42
CDY31901	Canola	cytosol	44.23	18.33
CDY54330	Canola	cytosol, nucleus, plastid	50.0	14.73
CDX87648	Canola	extracellular	58.65	12.66
CDX73215	Canola	cytosol, nucleus, plastid	59.62	12.63
VIT_18s0001g01120.t01	Wine grape	nucleus	52.88	11.29
KRH61001	Soybean	nucleus	52.88	11.29
KRH51666	Soybean	nucleus	51.92	11.09
KRH17475	Soybean	nucleus	50.96	10.82
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	50.0	10.74
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	50.0	10.7
KRH05990	Soybean	cytosol, nucleus, plastid	50.0	10.61
CDY01387	Canola	cytosol	4.81	2.34
CDY31902	Canola	cytosol	0.0	0.0
CDY54331	Canola	cytosol	0.0	0.0
CDX83743	Canola	cytosol	0.0	0.0
CDX83742	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX78831

EnsemblPlantsGene:GSBRNA2T00131303001

ProteinID:CDX78831

ProteinID:CDX78831.1

UniParc:UPI0004EE7EC7

MapMan:35.2

Description

BnaA01g08980D

Coordinates

chrLK031816:+:310421..311653

Molecular Weight (calculated)

12235.0 Da

IEP (calculated)

6.233

GRAVY (calculated)

0.072

Length

104 amino acids

Sequence
(BLAST)

001: MTKKLTGSVM SYFLDFALVP GSETIFESVM FQDCIFTILS YEMTGDLAEI RLFCSCTILR HDVLGQETLL NLFLRNYLPY NLYDKVERLR SMHQDLRHIL
101: TNRQ

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.