Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05990 | Soybean | cytosol, nucleus, plastid | 93.47 | 93.47 |
| KRH51666 | Soybean | nucleus | 88.78 | 89.32 |
| CDY31902 | Canola | cytosol | 13.06 | 88.89 |
| KRH61001 | Soybean | nucleus | 88.16 | 88.71 |
| CDX83743 | Canola | cytosol | 6.94 | 87.18 |
| VIT_18s0001g01120.t01 | Wine grape | nucleus | 84.08 | 84.6 |
| AT1G20200.1 | Thale cress | cytosol | 80.61 | 80.94 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 80.41 | 80.74 |
| Bra015799.1-P | Field mustard | plastid | 78.78 | 80.08 |
| CDX87648 | Canola | extracellular | 78.57 | 79.88 |
| AT1G75990.1 | Thale cress | cytosol | 79.18 | 79.67 |
| CDX73215 | Canola | cytosol, nucleus, plastid | 78.98 | 78.82 |
| Os08t0550100-01 | Rice | plasma membrane | 78.16 | 78.81 |
| Os09t0541900-01 | Rice | cytosol, nucleus, plastid | 77.35 | 77.82 |
| TraesCS4B01G265700.1 | Wheat | plastid | 77.14 | 77.46 |
| TraesCS4B01G265800.1 | Wheat | plastid | 76.94 | 77.25 |
| TraesCS4D01G265700.1 | Wheat | unclear | 76.73 | 77.05 |
| TraesCS4A01G044600.1 | Wheat | golgi | 76.73 | 76.73 |
| EES14113 | Sorghum | cytosol, nucleus, plastid | 77.55 | 76.61 |
| HORVU4Hr1G071480.8 | Barley | plastid | 77.14 | 76.36 |
| TraesCS5D01G340000.1 | Wheat | cytosol, nucleus, plastid | 76.94 | 76.01 |
| TraesCS5A01G335200.1 | Wheat | golgi | 76.73 | 75.81 |
| HORVU5Hr1G084540.1 | Barley | cytosol, nucleus, plastid | 76.73 | 75.81 |
| Zm00001d053232_P005 | Maize | cytosol, nucleus, plastid | 77.96 | 75.2 |
| CDY54330 | Canola | cytosol, nucleus, plastid | 52.65 | 73.09 |
| Zm00001d032010_P007 | Maize | cytosol, nucleus, plastid | 77.76 | 72.99 |
| GSMUA_Achr8P13080_001 | Banana | cytosol, extracellular, plastid | 39.39 | 71.22 |
| GSMUA_Achr8P13090_001 | Banana | cytosol | 34.9 | 70.66 |
| GSMUA_Achr5P18970_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 78.98 | 70.36 |
| PGSC0003DMT400015775 | Potato | endoplasmic reticulum, golgi, plasma membrane | 64.29 | 64.81 |
| Solyc01g111700.1.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 63.47 | 64.26 |
| CDY00383 | Canola | extracellular | 14.49 | 61.74 |
| CDY31901 | Canola | cytosol | 29.59 | 57.77 |
| CDX83742 | Canola | cytosol | 6.53 | 56.14 |
| CDX78831 | Canola | extracellular | 10.82 | 50.96 |
| HORVU7Hr1G080070.2 | Barley | cytosol | 8.78 | 44.79 |
| CDY22923 | Canola | extracellular | 20.0 | 44.75 |
| CDY54331 | Canola | cytosol | 7.76 | 44.71 |
| CDY47438 | Canola | plastid | 17.76 | 30.1 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100819526 | MapMan:19.2.6.2.2.3 | InterPro:26S_Psome_reg_C | EMBL:ACUP02009096 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_14G221600 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 | UniProt:I1MC13 | InterPro:IPR000717 |
| EnsemblPlants:KRH17475 | ProteinID:KRH17475 | ProteinID:KRH17475.1 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF08375 |
| PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF7 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI000233B9BE | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr14:-:48645870..48651228
Molecular Weight (calculated)
56123.3 Da
IEP (calculated)
9.338
GRAVY (calculated)
-0.382
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEDEEMKDQ ATPSHLLSSV PPSTLHHLKG IASIIETGSY SKEVRRIARA LRLTFAFRRK LTTPVLSSFL DYVLTPASEP HTRLSSYLPN PKEGDREMEV
101: DSATSTIQTL AAKHLLPELE IYCYLLVLLF LIDQKRYDAA KACSSASIVR LKSLNRRTVD VIASRLYFYY SYSYELTGNL AEIRGNLLAL HRIATLRHDE
201: LGQETLLNLL LRNYLHYNLY DQAEKLRSKA PRFEAHSNQQ FCRYLFYLGK IRTIQLEYTD AKESLLQAAR KAPSAAQGFR IQCNKWAVIV RLLLGEIPER
301: TVFMQRGMEK ALRPYFELTN AVRIGDLELF RNVAEKFGTT FNRDRTHNLI VRLRHNVIRT GLRNISISYS RISLVDVAKK LRLNSASPVA DAESIVAKAI
401: RDGAIDASLD HANGWMVSKE TGDIYSTNEP QLAFNSRIAF CLNMHNEAVR ALRFPPNTQK EKESAEKRRE RHQQEQELAK HIAEEDDDDF
101: DSATSTIQTL AAKHLLPELE IYCYLLVLLF LIDQKRYDAA KACSSASIVR LKSLNRRTVD VIASRLYFYY SYSYELTGNL AEIRGNLLAL HRIATLRHDE
201: LGQETLLNLL LRNYLHYNLY DQAEKLRSKA PRFEAHSNQQ FCRYLFYLGK IRTIQLEYTD AKESLLQAAR KAPSAAQGFR IQCNKWAVIV RLLLGEIPER
301: TVFMQRGMEK ALRPYFELTN AVRIGDLELF RNVAEKFGTT FNRDRTHNLI VRLRHNVIRT GLRNISISYS RISLVDVAKK LRLNSASPVA DAESIVAKAI
401: RDGAIDASLD HANGWMVSKE TGDIYSTNEP QLAFNSRIAF CLNMHNEAVR ALRFPPNTQK EKESAEKRRE RHQQEQELAK HIAEEDDDDF
001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
Arabidopsis Description
RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.