Factsheet for TraesCS5A01G335200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G369300.2
TraesCS3B01G401200.2
TraesCS3D01G362300.2
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	TraesCS3A01G369300.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS3B01G401200.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS3D01G362300.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6A01G251200.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6B01G274100.2	AT2G44950.1	21798944
AT1G75990.1	TraesCS6D01G233000.5	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	98.59	98.59
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	96.37	96.37
Os09t0541900-01	Rice	cytosol, nucleus, plastid	91.13	92.81
TraesCS4A01G044600.1	Wheat	golgi	87.5	88.57
VIT_18s0001g01120.t01	Wine grape	nucleus	77.42	78.85
KRH61001	Soybean	nucleus	77.42	78.85
KRH51666	Soybean	nucleus	77.02	78.44
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	76.81	78.07
VIT_03s0038g02590.t01	Wine grape	plastid	76.41	77.82
KRH17475	Soybean	nucleus	75.81	76.73
PGSC0003DMT400015774	Potato	nucleus	76.41	76.72
AT1G20200.1	Thale cress	cytosol	74.19	75.41
KRH05990	Soybean	cytosol, nucleus, plastid	73.79	74.69
AT1G75990.1	Thale cress	cytosol	72.98	74.33
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	38.31	70.11
GSMUA_Achr8P13090_001	Banana	cytosol	34.07	69.83
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	77.42	69.82
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	60.89	62.14
CDY01387	Canola	cytosol	18.75	43.46
Bra012219.1-P	Field mustard	cytosol	18.75	43.46
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	9.88	32.03

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS5A01G335200	EnsemblPlants:TraesCS5A01G335200.1	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:544512184..544515425

Molecular Weight (calculated)

55440.5 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.227

Length

496 amino acids

Sequence
(BLAST)

001: MPEDVEMNDS AQPAPVAAPA AADAPAPAPA LSTLQHLKEI ASVVEAGSLT KEVRRISRAV RLTVALRRRL AAPDVAAFLA FALPASSEAF TRLSPLLPKE
101: DGSEMDVDAA APAAQVSIKH GLPEIEIYCY LLVLIFLIDH KKYDEAKACA NSSIARLKNL NRRTVDVLAS RLYSYYSYVH ELTNSLAEIR GTLLGLHRMA
201: TLHHDELGQE TLLNLLLRNY LHYNLYDQAE KLRSKAPRFE AHSNQQFCRY LFYLGKIRTI QLEYTDAKES LLQAARKAPT AARGFRIQCN KWAILVRLLL
301: GEIPERTVFM QKGMKAALTP YFELTNAVRV GDLEVFRAVA EKFGSIFSAD RTSNLIVRLR HNVIRTGLRN ISISYSRISL ADIAKKLRLD TKTAVADAES
401: IVAKAIRDGA IDATIDHANG WVVSKETGDV YSTNEPQAAF NSRIAFCLNM HNEAVKALRF PPNSHKEKES AEKRRERLQQ EEELAKHMAE EDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.