CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012219.1-P	Field mustard	cytosol	100.0	100.0
CDX83742	Canola	cytosol	14.02	52.63
CDY54331	Canola	cytosol	16.36	41.18
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	31.78	25.09
Os09t0541900-01	Rice	cytosol, nucleus, plastid	45.79	20.12
Os08t0550100-01	Rice	plasma membrane	45.33	19.96
CDX87648	Canola	extracellular	43.93	19.5
TraesCS4D01G265700.1	Wheat	unclear	44.39	19.47
TraesCS4B01G265700.1	Wheat	plastid	44.39	19.47
TraesCS4A01G044600.1	Wheat	golgi	44.39	19.39
TraesCS4B01G265800.1	Wheat	plastid	43.93	19.26
CDX73215	Canola	cytosol, nucleus, plastid	43.93	19.14
HORVU4Hr1G071480.8	Barley	plastid	43.93	18.99
EES14113	Sorghum	cytosol, nucleus, plastid	43.93	18.95
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	43.46	18.75
TraesCS5A01G335200.1	Wheat	golgi	43.46	18.75
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	42.99	18.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	42.06	18.44
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	43.46	18.31
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	43.93	18.01
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	42.06	16.36
CDY31902	Canola	cytosol	3.27	9.72
CDY22923	Canola	extracellular	6.54	6.39
GSMUA_Achr8P13090_001	Banana	cytosol	7.01	6.2
CDY54330	Canola	cytosol, nucleus, plastid	9.81	5.95
CDY47438	Canola	plastid	7.48	5.54
CDY00383	Canola	extracellular	2.8	5.22
CDY31901	Canola	cytosol	6.07	5.18
CDX78831	Canola	extracellular	2.34	4.81
HORVU7Hr1G080070.2	Barley	cytosol	1.87	4.17
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	2.8	3.92
CDX83743	Canola	cytosol	0.47	2.56

Protein Annotations

MapMan:16.3.3.6	InterPro:26S_Psome_reg_C	Gene3D:3.30.110.20	GO:A0A078EJN5	InterPro:Alba-like_dom_sf	EnsemblPlants:CDY01387
ProteinID:CDY01387	ProteinID:CDY01387.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	EnsemblPlantsGene:GSBRNA2T00112367001	InterPro:IPR000717	InterPro:IPR036882
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PANTHER:PTHR13516	PANTHER:PTHR13516:SF10	SUPFAM:SSF82704
UniParc:UPI00025415FC	SEG:seg	:	:	:	:

Description

BnaA07g11600D

Coordinates

chrLK031926:+:623757..628459

Molecular Weight (calculated)

24169.3 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.343

Length

214 amino acids

Sequence
(BLAST)

001: MEKAINKSVT IAELIKRRIP GIHQHTSIGS IDITDIWESK EEGLLPIETT RHVLVITITL SKKELNTSAV GYQCPIPIEL GKPFVEIDYE GRGIFLPCIT
101: LQHYAMMSWV SSANPVADAE SIVPKAIRDG AMDATIDHKN GCMVSNETGD IYSTNEPQTE LNSRIAFCLN MHNKAVRALR CPPNTRKEKE SDEKRRKSWL
201: SIWLRKTMMT FREG

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.