CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00383	Canola	extracellular	48.86	93.04
CDX78831	Canola	extracellular	41.1	86.54
CDY47438	Canola	plastid	47.49	35.99
CDY31902	Canola	cytosol	11.42	34.72
CDX83743	Canola	cytosol	5.94	33.33
CDY54330	Canola	cytosol, nucleus, plastid	36.53	22.66
CDX87648	Canola	extracellular	47.95	21.78
CDX73215	Canola	cytosol, nucleus, plastid	48.4	21.59
CDY31901	Canola	cytosol	24.66	21.51
VIT_18s0001g01120.t01	Wine grape	nucleus	44.75	20.12
KRH17475	Soybean	nucleus	44.75	20.0
KRH51666	Soybean	nucleus	43.84	19.71
KRH61001	Soybean	nucleus	43.84	19.71
KRH05990	Soybean	cytosol, nucleus, plastid	43.38	19.39
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	39.27	17.77
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	37.9	17.08
CDY01387	Canola	cytosol	6.39	6.54
CDX83742	Canola	cytosol	1.37	5.26
CDY54331	Canola	cytosol	1.37	3.53

Protein Annotations

EnsemblPlants:CDY22923	EnsemblPlantsGene:GSBRNA2T00021298001	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	ProteinID:CDY22923	ProteinID:CDY22923.1
SEG:seg	UniParc:UPI0004EF3E87	UniProt:A0A078GE59	MapMan:35.2	:	:

Description

BnaA01g18610DBnaA01g18610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE59]

Coordinates

chrLK032137:+:420363..421940

Molecular Weight (calculated)

24970.2 Da

IEP (calculated)

6.349

GRAVY (calculated)

0.029

Length

219 amino acids

Sequence
(BLAST)

001: MTKKLTGYVM SYFLDFALVP GSETIFESVM FQDCIFTILS YEMTGDLAEI RLFCSCTILR LDVLGQETLL NLFLRNYLPY NLYDKAERLR SKAPRFEAHS
101: NQQAVRIDDL ELSNVQERFE TFSVNMTHNL IVRLRHKQNL DKATADGHNV DGGLKAIGLT DQRETPSFEA NPLDFLSTKL SYGWMLAPVP AAGTYIHNLS
201: LSFLLCFLKS FVIKQILCS

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.