CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY07438
CDY39298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	CDY07438	AT5G45010.1	19843313
AT1G20200.1	CDY39298	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G20200.1	Thale cress	cytosol	86.12	62.3
CDY31901	Canola	cytosol	43.91	61.75
CDX87648	Canola	extracellular	81.3	59.54
CDY00383	Canola	extracellular	19.26	59.13
CDX73215	Canola	cytosol, nucleus, plastid	81.87	58.86
KRH61001	Soybean	nucleus	75.92	55.03
KRH51666	Soybean	nucleus	75.92	55.03
VIT_18s0001g01120.t01	Wine grape	nucleus	75.35	54.62
CDY31902	Canola	cytosol	10.76	52.78
KRH17475	Soybean	nucleus	73.09	52.65
KRH05990	Soybean	cytosol, nucleus, plastid	72.8	52.45
CDX83743	Canola	cytosol	5.67	51.28
CDX78831	Canola	extracellular	14.73	50.0
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	62.32	45.45
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	62.32	45.27
CDY22923	Canola	extracellular	22.66	36.53
CDY47438	Canola	plastid	25.21	30.8
CDY01387	Canola	cytosol	5.95	9.81
CDX83742	Canola	cytosol	0.28	1.75
CDY54331	Canola	cytosol	0.28	1.18

Protein Annotations

EnsemblPlants:CDY54330	EnsemblPlantsGene:GSBRNA2T00013892001	Gene3D:1.25.40.570	GO:GO:0000502	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0009506	GO:GO:0016020
InterPro:IPR000717	InterPro:PCI_dom	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	PFscan:PS50250	ProteinID:CDY54330
ProteinID:CDY54330.1	SEG:seg	UniParc:UPI0004EE2354	UniProt:A0A078IT58	MapMan:19.2.6.2.2.3	:

Description

BnaCnng26760DBnaCnng26760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT58]

Coordinates

chrLK033305:+:16761..18611

Molecular Weight (calculated)

40546.6 Da

IEP (calculated)

8.840

GRAVY (calculated)

-0.307

Length

353 amino acids

Sequence
(BLAST)

001: MTQDVEMKDN HTPSQSIISS TTTSTIQHLK EIAALIDTGS YTKEVRRVAR AVRLTVGLRR KLTASVLSSF LLGDEHDMEV DTASSVAQAS SKHLSAELEI
101: YCYFIVLLFL VDQNKYNEAK ACSSASIARL KNLNRRTIDV IASRLYFYYS LSYEQTGDLA EIRRNLLALH HSATLRHDEL GQETLLNLLL RNYLHYNLYD
201: QAEKLRSKAP RFEAHSNQQF CRYLFYLGKI RTIQLEYTDA KESLLQAARK APIAAIGFRI QCNKWAILVR LLLGEIPERS IFTHKGMDKA LKPYFELTNA
301: VRIGDLDLFR TVQEKFSDTF AQDRTHNLID WTSQHKHLIL ENLPSRCRQE AEA

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.