CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00383	Canola	extracellular	27.34	68.7
CDX78831	Canola	extracellular	20.42	56.73
CDY22923	Canola	extracellular	35.99	47.49
CDY31902	Canola	cytosol	8.65	34.72
CDX83743	Canola	cytosol	4.15	30.77
CDY54330	Canola	cytosol, nucleus, plastid	30.8	25.21
CDY31901	Canola	cytosol	18.34	21.12
CDX87648	Canola	extracellular	34.95	20.95
CDX73215	Canola	cytosol, nucleus, plastid	34.95	20.57
KRH61001	Soybean	nucleus	31.83	18.89
KRH51666	Soybean	nucleus	31.49	18.69
VIT_18s0001g01120.t01	Wine grape	nucleus	30.8	18.28
KRH05990	Soybean	cytosol, nucleus, plastid	30.8	18.16
KRH17475	Soybean	nucleus	30.1	17.76
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	28.37	16.94
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	26.3	15.64
CDY01387	Canola	cytosol	5.54	7.48
CDX83742	Canola	cytosol	0.0	0.0
CDY54331	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY47438	EnsemblPlantsGene:GSBRNA2T00087478001	GO:A0A078IE31	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	ProteinID:CDY47438	ProteinID:CDY47438.1	TMHMM:TMhelix	UniParc:UPI0004EEA3A8
UniProt:A0A078IE31	MapMan:35.1	:	:	:	:

Description

BnaC09g31190DBnaC09g31190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE31]

Coordinates

chrLK032717:-:3089..12037

Molecular Weight (calculated)

33370.4 Da

IEP (calculated)

8.455

GRAVY (calculated)

0.069

Length

289 amino acids

Sequence
(BLAST)

001: MSTLNSYNYK PHYLISSQQN HCSSHYLSVR LYGSNWKLQG NTSNPVRIFV FDGLLILRIF TIFSICLMFL LTSVWSKVVS IAEGLYARFS AAAVFLGPYK
101: AGSFFFVDIC NKNLDTFGDN HYYAQMVDTM HSLIKVQGAH RLCLFVTKKL TGSVMYYFLD FALVPGSETI FESVMFQDCI FTILSYEMTG DLAEILLFCS
201: CTILRHDVLG QETLLNLFLR NYLPYNLYDK AERLRSKAPR FEAHSNQQAV RIGDLELSNV QERFETFSVN MTHNLIVRLR HKQNRTTQH

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.